Package org.rcsb.cif.model.generated

Class EmImageScans

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.EmImageScans

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class EmImageScans
extends BaseCategory

Data items in the EM_IMAGE_SCANS category record details of the image scanning device (microdensitometer) and parameters for digitization of the image.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
EmImageScans(String name)
EmImageScans(String name, int rowCount, Object[] encodedColumns)
EmImageScans(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getCitationId()	This data item is a pointer to _citation.id in the CITATION category.
StrColumn	getDetails()	Any additional details about image recording.
IntColumn	getDimensionHeight()	height of scanned image
IntColumn	getDimensionWidth()	width of scanned image
StrColumn	getEntryId()	This data item is a pointer to _entry.id in the ENTRY category.
IntColumn	getFramesPerImage()	Total number of time-slice (movie) frames taken per image.
StrColumn	getId()	The value of _em_image_scans.id must uniquely identify the images scanned.
StrColumn	getImageRecordingId()	foreign key linked to _em_image_recording
IntColumn	getNumberDigitalImages()	The number of real images.
FloatColumn	getOdRange()	The optical density range (OD=-log 10 transmission).
IntColumn	getQuantBitSize()	The number of bits per pixel.
FloatColumn	getSamplingSize()	The sampling step size (microns) set on the scanner.
StrColumn	getScannerModel()	The scanner model.
StrColumn	getUsedFramesPerImage()	Range of time-slice (movie) frames used for the reconstruction.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

EmImageScans

public EmImageScans(String name,
                    Map<String,Column> columns)

EmImageScans

public EmImageScans(String name,
                    int rowCount,
                    Object[] encodedColumns)

EmImageScans

public EmImageScans(String name)

Method Detail

getEntryId

public StrColumn getEntryId()

This data item is a pointer to _entry.id in the ENTRY category.

Returns:

StrColumn

getId

public StrColumn getId()

The value of _em_image_scans.id must uniquely identify the images scanned.

Returns:

StrColumn

getNumberDigitalImages

public IntColumn getNumberDigitalImages()

The number of real images.

Returns:

IntColumn

getDetails

public StrColumn getDetails()

Any additional details about image recording.

Returns:

StrColumn

getScannerModel

public StrColumn getScannerModel()

The scanner model.

Returns:

StrColumn

getSamplingSize

public FloatColumn getSamplingSize()

The sampling step size (microns) set on the scanner.

Returns:

FloatColumn

getOdRange

public FloatColumn getOdRange()

The optical density range (OD=-log 10 transmission). To the eye OD=1 appears light grey and OD=3 is opaque.

Returns:

FloatColumn

getQuantBitSize

public IntColumn getQuantBitSize()

The number of bits per pixel.

Returns:

IntColumn

getCitationId

public StrColumn getCitationId()

This data item is a pointer to _citation.id in the CITATION category.

Returns:

StrColumn

getDimensionHeight

public IntColumn getDimensionHeight()

height of scanned image

Returns:

IntColumn

getDimensionWidth

public IntColumn getDimensionWidth()

width of scanned image

Returns:

IntColumn

getFramesPerImage

public IntColumn getFramesPerImage()

Total number of time-slice (movie) frames taken per image.

Returns:

IntColumn

getImageRecordingId

public StrColumn getImageRecordingId()

foreign key linked to _em_image_recording

Returns:

StrColumn

getUsedFramesPerImage

public StrColumn getUsedFramesPerImage()

Range of time-slice (movie) frames used for the reconstruction.

Returns:

StrColumn