Package org.rcsb.cif.model.generated

Class EmHelicalEntity

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.EmHelicalEntity

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class EmHelicalEntity
extends BaseCategory

Data items in the EM_HELICAL_ENTITY category record details for a helical or filament type of assembly component.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
EmHelicalEntity(String name)
EmHelicalEntity(String name, int rowCount, Object[] encodedColumns)
EmHelicalEntity(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
FloatColumn	getAngularRotationPerSubunit()	The angular rotation per helical subunit in degrees.
FloatColumn	getAxialRisePerSubunit()	The axial rise per subunit in the helical assembly.
StrColumn	getAxialSymmetry()	Symmetry of the helical axis, either cyclic (Cn) or dihedral (Dn), where n>=1.
StrColumn	getDetails()	Any other details regarding the helical assembly
StrColumn	getDyad()	Value should be YES if a the filament has two-fold symmetry perpendicular to the helical axis.
StrColumn	getEntityAssemblyId()	The value of _em_helical_entity.entity_assembly_id identifies a particular assembly component.
StrColumn	getHand()	Handedness of the helix: right handed or left handed
StrColumn	getId()	The value of _em_helical_entity.id must uniquely identify a set of the filament parameters for this assembly component.
StrColumn	getImageProcessingId()	The value of _em_helical_entity.reconstruction_id identifies a particular reconstruction.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

EmHelicalEntity

public EmHelicalEntity(String name,
                       Map<String,Column> columns)

EmHelicalEntity

public EmHelicalEntity(String name,
                       int rowCount,
                       Object[] encodedColumns)

EmHelicalEntity

public EmHelicalEntity(String name)

Method Detail

getId

public StrColumn getId()

The value of _em_helical_entity.id must uniquely identify a set of the filament parameters for this assembly component.

Returns:

StrColumn

getEntityAssemblyId

public StrColumn getEntityAssemblyId()

The value of _em_helical_entity.entity_assembly_id identifies a particular assembly component. This data item is a pointer to _em_entity_assembly.id in the EM_ENTITY_ASSEMBLY category.

Returns:

StrColumn

getImageProcessingId

public StrColumn getImageProcessingId()

The value of _em_helical_entity.reconstruction_id identifies a particular reconstruction. This data item is a pointer to _em_image_processing.id.

Returns:

StrColumn

getDetails

public StrColumn getDetails()

Any other details regarding the helical assembly

Returns:

StrColumn

getDyad

public StrColumn getDyad()

Value should be YES if a the filament has two-fold symmetry perpendicular to the helical axis.

Returns:

StrColumn

getAxialSymmetry

public StrColumn getAxialSymmetry()

Symmetry of the helical axis, either cyclic (Cn) or dihedral (Dn), where n>=1.

Returns:

StrColumn

getAngularRotationPerSubunit

public FloatColumn getAngularRotationPerSubunit()

The angular rotation per helical subunit in degrees.

Returns:

FloatColumn

getAxialRisePerSubunit

public FloatColumn getAxialRisePerSubunit()

The axial rise per subunit in the helical assembly.

Returns:

FloatColumn

getHand

public StrColumn getHand()

Handedness of the helix: right handed or left handed

Returns:

StrColumn