Package org.rcsb.cif.model.generated

Class EmEntityAssemblyNaturalsource

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.EmEntityAssemblyNaturalsource

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class EmEntityAssemblyNaturalsource
extends BaseCategory

Data items in this category record taxonomic details about the natural source for EM assemblies and assembly components.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
EmEntityAssemblyNaturalsource(String name)
EmEntityAssemblyNaturalsource(String name, int rowCount, Object[] encodedColumns)
EmEntityAssemblyNaturalsource(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getCell()	The cell type from which the component was obtained.
StrColumn	getCellularLocation()	The cellular location of the component.
StrColumn	getEntityAssemblyId()	Pointer to the assembly component defined in the EM ENTITY ASSEMBLY category.
StrColumn	getId()	Ordinal key for the em_entity_assembly_naturalsource category.
IntColumn	getNcbiTaxId()	The NCBI taxonomy id for the natural organism source of the component.
StrColumn	getOrgan()	The organ of the organism from which the component was obtained.
StrColumn	getOrganelle()	The organelle from which the component was obtained.
StrColumn	getOrganism()	The genus-species of the natural organism from which the component was obtained.
StrColumn	getStrain()	The strain of the natural organism from which the component was obtained, if relevant.
StrColumn	getTissue()	The tissue of the natural organism from which the component was obtained.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

EmEntityAssemblyNaturalsource

public EmEntityAssemblyNaturalsource(String name,
                                     Map<String,Column> columns)

EmEntityAssemblyNaturalsource

public EmEntityAssemblyNaturalsource(String name,
                                     int rowCount,
                                     Object[] encodedColumns)

EmEntityAssemblyNaturalsource

public EmEntityAssemblyNaturalsource(String name)

Method Detail

getCell

public StrColumn getCell()

The cell type from which the component was obtained.

Returns:

StrColumn

getCellularLocation

public StrColumn getCellularLocation()

The cellular location of the component.

Returns:

StrColumn

getEntityAssemblyId

public StrColumn getEntityAssemblyId()

Pointer to the assembly component defined in the EM ENTITY ASSEMBLY category.

Returns:

StrColumn

getId

public StrColumn getId()

Ordinal key for the em_entity_assembly_naturalsource category.

Returns:

StrColumn

getNcbiTaxId

public IntColumn getNcbiTaxId()

The NCBI taxonomy id for the natural organism source of the component.

Returns:

IntColumn

getOrganism

public StrColumn getOrganism()

The genus-species of the natural organism from which the component was obtained.

Returns:

StrColumn

getOrganelle

public StrColumn getOrganelle()

The organelle from which the component was obtained.

Returns:

StrColumn

getOrgan

public StrColumn getOrgan()

The organ of the organism from which the component was obtained.

Returns:

StrColumn

getStrain

public StrColumn getStrain()

The strain of the natural organism from which the component was obtained, if relevant.

Returns:

StrColumn

getTissue

public StrColumn getTissue()

The tissue of the natural organism from which the component was obtained.

Returns:

StrColumn