Package org.rcsb.cif.model.generated

Class EmDepui

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.EmDepui

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class EmDepui
extends BaseCategory

Some internal items to power the deposition interface

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
EmDepui(String name)
EmDepui(String name, int rowCount, Object[] encodedColumns)
EmDepui(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getDepositorHoldInstructions()	Choose the manner in which you would like the map and associated files (half maps, additional maps, masks, FSC curves, structure factors, layer lines, and images) to be released.
StrColumn	getEntryId()	Primary key
StrColumn	getMacromoleculeDescription()	Indicates whether the authors are providing a macromolecule level description of their sample
StrColumn	getObsoleteInstructions()	Instruction for annotators on why a previous released entry should be obsoleted.
StrColumn	getSameAuthorsAsPdb()	Indicates whether the authors for the EMDB entry are the same as for the PDB entry in a joint map + model deposition
StrColumn	getSameTitleAsPdb()	Indicates whether the title for the EMDB entry is the same as for the PDB entry in a joint map + model deposition

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

EmDepui

public EmDepui(String name,
               Map<String,Column> columns)

EmDepui

public EmDepui(String name,
               int rowCount,
               Object[] encodedColumns)

EmDepui

public EmDepui(String name)

Method Detail

getDepositorHoldInstructions

public StrColumn getDepositorHoldInstructions()

Choose the manner in which you would like the map and associated files (half maps, additional maps, masks, FSC curves, structure factors, layer lines, and images) to be released. Release of these files can be delayed either until publication of the associated primary citation or until one year after completion of the deposition. It is the responsibility of the depositor to notify the EMDB when the primary citation has been published. Please note that map-associated experimental information and metadata (header data) are made available to the public when an entry is placed on hold.

Returns:

StrColumn

getEntryId

public StrColumn getEntryId()

Primary key

Returns:

StrColumn

getMacromoleculeDescription

public StrColumn getMacromoleculeDescription()

Indicates whether the authors are providing a macromolecule level description of their sample

Returns:

StrColumn

getObsoleteInstructions

public StrColumn getObsoleteInstructions()

Instruction for annotators on why a previous released entry should be obsoleted. Example of valid request: * Author wants to replace a map that has already been released, following discovery of a processing error Examples of invalid requests: * Someone other than the author wants to obsolete a map. * Legal conflict of interest Obsoletion is not required for the following actions: * to change released metadata info. * to update the map of an HPUB entry. * to change the hand of a released map. * to deposit an improved version of a released map.

Returns:

StrColumn

getSameAuthorsAsPdb

public StrColumn getSameAuthorsAsPdb()

Indicates whether the authors for the EMDB entry are the same as for the PDB entry in a joint map + model deposition

Returns:

StrColumn

getSameTitleAsPdb

public StrColumn getSameTitleAsPdb()

Indicates whether the title for the EMDB entry is the same as for the PDB entry in a joint map + model deposition

Returns:

StrColumn