Package org.rcsb.cif.model.generated

Class Em3dFitting

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.Em3dFitting

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class Em3dFitting
extends BaseCategory

Data items in the 3D_FITTING category record details of the method of fitting atomic coordinates from a PDB file into a 3d-em volume map file

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
Em3dFitting(String name)
Em3dFitting(String name, int rowCount, Object[] encodedColumns)
Em3dFitting(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getDetails()	Any additional details regarding fitting of atomic coordinates into the 3DEM volume, including data and considerations from other methods used in computation of the model.
StrColumn	getEntryId()	This data item is a pointer to _entry_id in the ENTRY category.
StrColumn	getId()	The value of _em_3d_fitting.id must uniquely identify a fitting procedure of atomic coordinates into 3dem reconstructed map volume.
StrColumn	getMethod()	The method used to fit atomic coordinates into the 3dem reconstructed map.
FloatColumn	getOverallBValue()	The overall B (temperature factor) value for the 3d-em volume.
StrColumn	getRefProtocol()	The refinement protocol used.
StrColumn	getRefSpace()	A flag to indicate whether fitting was carried out in real or reciprocal refinement space.
StrColumn	getSoftwareName()	The software used for fitting atomic coordinates to the map.
StrColumn	getTargetCriteria()	The measure used to assess quality of fit of the atomic coordinates in the 3DEM map volume.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

Em3dFitting

public Em3dFitting(String name,
                   Map<String,Column> columns)

Em3dFitting

public Em3dFitting(String name,
                   int rowCount,
                   Object[] encodedColumns)

Em3dFitting

public Em3dFitting(String name)

Method Detail

getId

public StrColumn getId()

The value of _em_3d_fitting.id must uniquely identify a fitting procedure of atomic coordinates into 3dem reconstructed map volume.

Returns:

StrColumn

getEntryId

public StrColumn getEntryId()

This data item is a pointer to _entry_id in the ENTRY category.

Returns:

StrColumn

getMethod

public StrColumn getMethod()

The method used to fit atomic coordinates into the 3dem reconstructed map.

Returns:

StrColumn

getTargetCriteria

public StrColumn getTargetCriteria()

The measure used to assess quality of fit of the atomic coordinates in the 3DEM map volume.

Returns:

StrColumn

getSoftwareName

public StrColumn getSoftwareName()

The software used for fitting atomic coordinates to the map.

Returns:

StrColumn

getDetails

public StrColumn getDetails()

Any additional details regarding fitting of atomic coordinates into the 3DEM volume, including data and considerations from other methods used in computation of the model.

Returns:

StrColumn

getOverallBValue

public FloatColumn getOverallBValue()

The overall B (temperature factor) value for the 3d-em volume.

Returns:

FloatColumn

getRefSpace

public StrColumn getRefSpace()

A flag to indicate whether fitting was carried out in real or reciprocal refinement space.

Returns:

StrColumn

getRefProtocol

public StrColumn getRefProtocol()

The refinement protocol used.

Returns:

StrColumn