Package org.rcsb.cif.model.generated

Class Em2dCrystalEntity

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.Em2dCrystalEntity

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class Em2dCrystalEntity
extends BaseCategory

Data items in the EM_SYMMETRY_2DX category record 2D crystal symmetry parameters utilized in a 3DEM reconstruction.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
Em2dCrystalEntity(String name)
Em2dCrystalEntity(String name, int rowCount, Object[] encodedColumns)
Em2dCrystalEntity(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
FloatColumn	getAngleGamma()	Unit-cell angle gamma in degrees.
FloatColumn	getCSamplingLength()	Length used to sample the reciprocal lattice lines in the c-direction.
StrColumn	getEntityAssemblyId()	Corresponding key in _em_entity_assembly category.
StrColumn	getId()	Unique key for the 2d_crystal_entity category.
StrColumn	getImageProcessingId()	pointer to _em_image_processing.id in the EM_IMAGE_PROCESSING category.
FloatColumn	getLengthA()	Unit-cell length a in Angstroms.
FloatColumn	getLengthB()	Unit-cell length b in Angstroms.
FloatColumn	getLengthC()	Thickness of 2D crystal
StrColumn	getSpaceGroupNameH_M()	There are 17 plane groups classified as oblique, rectangular, square, and hexagonal.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

Em2dCrystalEntity

public Em2dCrystalEntity(String name,
                         Map<String,Column> columns)

Em2dCrystalEntity

public Em2dCrystalEntity(String name,
                         int rowCount,
                         Object[] encodedColumns)

Em2dCrystalEntity

public Em2dCrystalEntity(String name)

Method Detail

getAngleGamma

public FloatColumn getAngleGamma()

Unit-cell angle gamma in degrees.

Returns:

FloatColumn

getCSamplingLength

public FloatColumn getCSamplingLength()

Length used to sample the reciprocal lattice lines in the c-direction.

Returns:

FloatColumn

getImageProcessingId

public StrColumn getImageProcessingId()

pointer to _em_image_processing.id in the EM_IMAGE_PROCESSING category.

Returns:

StrColumn

getId

public StrColumn getId()

Unique key for the 2d_crystal_entity category.

Returns:

StrColumn

getEntityAssemblyId

public StrColumn getEntityAssemblyId()

Corresponding key in _em_entity_assembly category.

Returns:

StrColumn

getLengthA

public FloatColumn getLengthA()

Unit-cell length a in Angstroms.

Returns:

FloatColumn

getLengthB

public FloatColumn getLengthB()

Unit-cell length b in Angstroms.

Returns:

FloatColumn

getLengthC

public FloatColumn getLengthC()

Thickness of 2D crystal

Returns:

FloatColumn

getSpaceGroupNameH_M

public StrColumn getSpaceGroupNameH_M()

There are 17 plane groups classified as oblique, rectangular, square, and hexagonal. To describe the symmetry of 2D crystals of biological molecules, plane groups are expanded to equivalent noncentrosymmetric space groups. The 2D crystal plane corresponds to the 'ab' plane of the space group. Enumerated space group descriptions include the plane group number in parentheses, the H-M plane group symbol, and the plane group class.

Returns:

StrColumn