Package org.rcsb.cif.model.generated

Class Database

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.Database

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class Database
extends BaseCategory

Data items in the DATABASE category have been superseded by data items in the DATABASE_2 category. They are included here only for compliance with older CIFs.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
Database(String name)
Database(String name, int rowCount, Object[] encodedColumns)
Database(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getCodeCAS()	The code assigned by Chemical Abstracts.
StrColumn	getCodeCSD()	The code assigned by the Cambridge Structural Database.
StrColumn	getCodeDepnumCcdcArchive()	Deposition numbers assigned by the Cambridge Crystallographic Data Centre (CCDC) to files containing structural information archived by the CCDC.
StrColumn	getCodeDepnumCcdcFiz()	Deposition numbers assigned by the Fachinformationszentrum Karlsruhe (FIZ) to files containing structural information archived by the Cambridge Crystallographic Data Centre (CCDC).
StrColumn	getCodeDepnumCcdcJournal()	Deposition numbers assigned by various journals to files containing structural information archived by the Cambridge Crystallographic Data Centre (CCDC).
StrColumn	getCodeICSD()	The code assigned by the Inorganic Crystal Structure Database.
StrColumn	getCodeMDF()	The code assigned by the Metals Data File.
StrColumn	getCodeNBS()	The code assigned by the NBS (NIST) Crystal Data Database.
StrColumn	getCodePDB()	The code assigned by the Protein Data Bank.
StrColumn	getCodePDF()	The code assigned by the Powder Diffraction File (JCPDS/ICDD).
StrColumn	getCSDHistory()	A history of changes made by the Cambridge Crystallographic Data Centre and incorporated into the Cambridge Structural Database (CSD).
StrColumn	getEntryId()	This data item is a pointer to _entry.id in the ENTRY category.
StrColumn	getJournalASTM()	The ASTM CODEN designator for a journal as given in the Chemical Source List maintained by the Chemical Abstracts Service.
StrColumn	getJournalCSD()	The journal code used in the Cambridge Structural Database.
StrColumn	getPdbxCodeNDB()	The code assigned by the NDB.
StrColumn	getPdbxCodePDB()	The code assigned by the PDB.
StrColumn	getPdbxRelatedCodesPDB()	The codes of related PDB entries.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

Database

public Database(String name,
                Map<String,Column> columns)

Database

public Database(String name,
                int rowCount,
                Object[] encodedColumns)

Database

public Database(String name)

Method Detail

getEntryId

public StrColumn getEntryId()

This data item is a pointer to _entry.id in the ENTRY category.

Returns:

StrColumn

getJournalASTM

public StrColumn getJournalASTM()

The ASTM CODEN designator for a journal as given in the Chemical Source List maintained by the Chemical Abstracts Service.

Returns:

StrColumn

getJournalCSD

public StrColumn getJournalCSD()

The journal code used in the Cambridge Structural Database.

Returns:

StrColumn

getCSDHistory

public StrColumn getCSDHistory()

A history of changes made by the Cambridge Crystallographic Data Centre and incorporated into the Cambridge Structural Database (CSD).

Returns:

StrColumn

getCodeCAS

public StrColumn getCodeCAS()

The code assigned by Chemical Abstracts.

Returns:

StrColumn

getCodeCSD

public StrColumn getCodeCSD()

The code assigned by the Cambridge Structural Database.

Returns:

StrColumn

getCodeICSD

public StrColumn getCodeICSD()

The code assigned by the Inorganic Crystal Structure Database.

Returns:

StrColumn

getCodeMDF

public StrColumn getCodeMDF()

The code assigned by the Metals Data File.

Returns:

StrColumn

getCodeNBS

public StrColumn getCodeNBS()

The code assigned by the NBS (NIST) Crystal Data Database.

Returns:

StrColumn

getCodePDB

public StrColumn getCodePDB()

The code assigned by the Protein Data Bank.

Returns:

StrColumn

getCodePDF

public StrColumn getCodePDF()

The code assigned by the Powder Diffraction File (JCPDS/ICDD).

Returns:

StrColumn

getCodeDepnumCcdcFiz

public StrColumn getCodeDepnumCcdcFiz()

Deposition numbers assigned by the Fachinformationszentrum Karlsruhe (FIZ) to files containing structural information archived by the Cambridge Crystallographic Data Centre (CCDC).

Returns:

StrColumn

getCodeDepnumCcdcJournal

public StrColumn getCodeDepnumCcdcJournal()

Deposition numbers assigned by various journals to files containing structural information archived by the Cambridge Crystallographic Data Centre (CCDC).

Returns:

StrColumn

getCodeDepnumCcdcArchive

public StrColumn getCodeDepnumCcdcArchive()

Deposition numbers assigned by the Cambridge Crystallographic Data Centre (CCDC) to files containing structural information archived by the CCDC.

Returns:

StrColumn

getPdbxCodeNDB

public StrColumn getPdbxCodeNDB()

The code assigned by the NDB.

Returns:

StrColumn

getPdbxCodePDB

public StrColumn getPdbxCodePDB()

The code assigned by the PDB.

Returns:

StrColumn

getPdbxRelatedCodesPDB

public StrColumn getPdbxRelatedCodesPDB()

The codes of related PDB entries.

Returns:

StrColumn