Package org.rcsb.cif.model.generated

Class ChemLinkBond

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.ChemLinkBond

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class ChemLinkBond
extends BaseCategory

Data items in the CHEM_LINK_BOND category record details about bonds in a link between components in the chemical structure.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
ChemLinkBond(String name)
ChemLinkBond(String name, int rowCount, Object[] encodedColumns)
ChemLinkBond(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAtom1CompId()	This data item indicates whether atom 1 is found in the first or the second of the two components connected by the link.
StrColumn	getAtom2CompId()	This data item indicates whether atom 2 is found in the first or the second of the two chemical components connected by the link.
StrColumn	getAtomId1()	The ID of the first of the two atoms that define the bond.
StrColumn	getAtomId2()	The ID of the second of the two atoms that define the bond.
StrColumn	getLinkId()	This data item is a pointer to _chem_link.id in the CHEM_LINK category.
FloatColumn	getValueDist()	The value that should be taken as the target for the chemical bond associated with the specified atoms, expressed as a distance.
FloatColumn	getValueDistEsd()	The standard uncertainty (estimated standard deviation) of _chem_link_bond.value_dist.
StrColumn	getValueOrder()	The value that should be taken as the target for the chemical bond associated with the specified atoms, expressed as a bond order.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

ChemLinkBond

public ChemLinkBond(String name,
                    Map<String,Column> columns)

ChemLinkBond

public ChemLinkBond(String name,
                    int rowCount,
                    Object[] encodedColumns)

ChemLinkBond

public ChemLinkBond(String name)

Method Detail

getAtom1CompId

public StrColumn getAtom1CompId()

This data item indicates whether atom 1 is found in the first or the second of the two components connected by the link.

Returns:

StrColumn

getAtom2CompId

public StrColumn getAtom2CompId()

This data item indicates whether atom 2 is found in the first or the second of the two chemical components connected by the link.

Returns:

StrColumn

getAtomId1

public StrColumn getAtomId1()

The ID of the first of the two atoms that define the bond. As this data item does not point to a specific atom in a specific chemical component, it is not a child in the linkage sense.

Returns:

StrColumn

getAtomId2

public StrColumn getAtomId2()

The ID of the second of the two atoms that define the bond. As this data item does not point to a specific atom in a specific component, it is not a child in the linkage sense.

Returns:

StrColumn

getLinkId

public StrColumn getLinkId()

This data item is a pointer to _chem_link.id in the CHEM_LINK category.

Returns:

StrColumn

getValueDist

public FloatColumn getValueDist()

The value that should be taken as the target for the chemical bond associated with the specified atoms, expressed as a distance.

Returns:

FloatColumn

getValueDistEsd

public FloatColumn getValueDistEsd()

The standard uncertainty (estimated standard deviation) of _chem_link_bond.value_dist.

Returns:

FloatColumn

getValueOrder

public StrColumn getValueOrder()

The value that should be taken as the target for the chemical bond associated with the specified atoms, expressed as a bond order.

Returns:

StrColumn