Package org.rcsb.cif.model.generated

Class ChemLinkAngle

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.ChemLinkAngle

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class ChemLinkAngle
extends BaseCategory

Data items in the CHEM_LINK_ANGLE category record details about angles in a link between chemical components.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
ChemLinkAngle(String name)
ChemLinkAngle(String name, int rowCount, Object[] encodedColumns)
ChemLinkAngle(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAtom1CompId()	This data item indicates whether atom 1 is found in the first or the second of the two components connected by the link.
StrColumn	getAtom2CompId()	This data item indicates whether atom 2 is found in the first or the second of the two components connected by the link.
StrColumn	getAtom3CompId()	This data item indicates whether atom 3 is found in the first or the second of the two components connected by the link.
StrColumn	getAtomId1()	The ID of the first of the three atoms that define the angle.
StrColumn	getAtomId2()	The ID of the second of the three atoms that define the angle.
StrColumn	getAtomId3()	The ID of the third of the three atoms that define the angle.
StrColumn	getLinkId()	This data item is a pointer to _chem_link.id in the CHEM_LINK category.
FloatColumn	getValueAngle()	The value that should be taken as the target value for the angle associated with the specified atoms, expressed in degrees.
FloatColumn	getValueAngleEsd()	The standard uncertainty (estimated standard deviation) of _chem_link_angle.value_angle.
FloatColumn	getValueDist()	The value that should be taken as the target value for the angle associated with the specified atoms, expressed as the distance between the atoms specified by _chem_comp_angle.atom_id_1 and _chem_comp_angle.atom_id_3.
FloatColumn	getValueDistEsd()	The standard uncertainty (estimated standard deviation) of _chem_comp_angle.value_dist.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

ChemLinkAngle

public ChemLinkAngle(String name,
                     Map<String,Column> columns)

ChemLinkAngle

public ChemLinkAngle(String name,
                     int rowCount,
                     Object[] encodedColumns)

ChemLinkAngle

public ChemLinkAngle(String name)

Method Detail

getAtom1CompId

public StrColumn getAtom1CompId()

This data item indicates whether atom 1 is found in the first or the second of the two components connected by the link.

Returns:

StrColumn

getAtom2CompId

public StrColumn getAtom2CompId()

This data item indicates whether atom 2 is found in the first or the second of the two components connected by the link.

Returns:

StrColumn

getAtom3CompId

public StrColumn getAtom3CompId()

This data item indicates whether atom 3 is found in the first or the second of the two components connected by the link.

Returns:

StrColumn

getAtomId1

public StrColumn getAtomId1()

The ID of the first of the three atoms that define the angle. An atom with this ID must exist in the component of the type specified by _chem_comp_link.type_comp_1 (or _chem_comp_link.type_comp_2, where the appropriate data item is indicated by the value of _chem_comp_angle.atom_1_comp_id).

Returns:

StrColumn

getAtomId2

public StrColumn getAtomId2()

The ID of the second of the three atoms that define the angle. The second atom is taken to be the apex of the angle. An atom with this ID must exist in the component of the type specified by _chem_comp_link.type_comp_1 (or _chem_comp_link.type_comp_2, where the appropriate data item is indicated by the value of _chem_comp_angle.atom_2_comp_id).

Returns:

StrColumn

getAtomId3

public StrColumn getAtomId3()

The ID of the third of the three atoms that define the angle. An atom with this ID must exist in the component of the type specified by _chem_comp_link.type_comp_1 (or _chem_comp_link.type_comp_2, where the appropriate data item is indicated by the value of _chem_comp_angle.atom_3_comp_id).

Returns:

StrColumn

getLinkId

public StrColumn getLinkId()

This data item is a pointer to _chem_link.id in the CHEM_LINK category.

Returns:

StrColumn

getValueAngle

public FloatColumn getValueAngle()

The value that should be taken as the target value for the angle associated with the specified atoms, expressed in degrees.

Returns:

FloatColumn

getValueAngleEsd

public FloatColumn getValueAngleEsd()

The standard uncertainty (estimated standard deviation) of _chem_link_angle.value_angle.

Returns:

FloatColumn

getValueDist

public FloatColumn getValueDist()

The value that should be taken as the target value for the angle associated with the specified atoms, expressed as the distance between the atoms specified by _chem_comp_angle.atom_id_1 and _chem_comp_angle.atom_id_3.

Returns:

FloatColumn

getValueDistEsd

public FloatColumn getValueDistEsd()

The standard uncertainty (estimated standard deviation) of _chem_comp_angle.value_dist.

Returns:

FloatColumn