Package org.rcsb.cif.model

Interface Category

All Known Implementing Classes:

AtomSite, AtomSiteAnisotrop, AtomSites, AtomSitesAlt, AtomSitesAltEns, AtomSitesAltGen, AtomSitesFootnote, AtomType, Audit, AuditAuthor, AuditConform, AuditContactAuthor, AuditLink, BaseCategory, Cell, CellMeasurement, CellMeasurementRefln, ChemComp, ChemCompAngle, ChemCompAtom, ChemCompBond, ChemCompChir, ChemCompChirAtom, ChemCompLink, ChemCompPlane, ChemCompPlaneAtom, ChemCompTor, ChemCompTorValue, Chemical, ChemicalConnAtom, ChemicalConnBond, ChemicalFormula, ChemLink, ChemLinkAngle, ChemLinkBond, ChemLinkChir, ChemLinkChirAtom, ChemLinkPlane, ChemLinkPlaneAtom, ChemLinkTor, ChemLinkTorValue, Citation, CitationAuthor, CitationEditor, Computing, Database, Database2, DatabasePDBCaveat, DatabasePDBMatrix, DatabasePDBRemark, DatabasePDBRev, DatabasePDBRevRecord, DatabasePDBTvect, Diffrn, DiffrnAttenuator, DiffrnDetector, DiffrnMeasurement, DiffrnOrientMatrix, DiffrnOrientRefln, DiffrnRadiation, DiffrnRadiationWavelength, DiffrnRefln, DiffrnReflns, DiffrnReflnsClass, DiffrnScaleGroup, DiffrnSource, DiffrnStandardRefln, DiffrnStandards, Em2dCrystalEntity, Em2dProjectionSelection, Em3dCrystalEntity, Em3dFitting, Em3dFittingList, Em3dReconstruction, EmAdmin, EmAssembly, EmAuthorList, EmBuffer, EmBufferComponent, EmCrystalFormation, EmCtfCorrection, EmDbReference, EmDbReferenceAuxiliary, EmDepositorInfo, EmDepui, EmDetector, EmDiffraction, EmDiffractionShell, EmDiffractionStats, EmEmbedding, EmEntityAssembly, EmEntityAssemblyMolwt, EmEntityAssemblyNaturalsource, EmEntityAssemblyRecombinant, EmEulerAngleAssignment, EmExperiment, EmFiducialMarkers, EmFigureDepositorInfo, EmFinalClassification, EmFocusedIonBeam, EmFscCurve, EmGridPretreatment, EmHelicalEntity, EmHighPressureFreezing, EmImageProcessing, EmImageRecording, EmImageScans, EmImaging, EmImagingOptics, EmInterpretFigure, EmLayerLines, EmLayerLinesDepositorInfo, EmMap, EmMapDepositorInfo, EmMaskDepositorInfo, EmObsolete, EmParticleSelection, EmSamplePreparation, EmSampleSupport, EmShadowing, EmSingleParticleEntity, EmSoftware, EmSpecimen, EmStaining, EmStartModel, EmStructureFactors, EmStructureFactorsDepositorInfo, EmSupersede, EmSupportFilm, EmTomography, EmTomographySpecimen, EmUltramicrotomy, EmVirusEntity, EmVirusNaturalHost, EmVirusShell, EmVitrification, EmVolumeSelection, Entity, EntityKeywords, EntityLink, EntityNameCom, EntityNameSys, EntityPoly, EntityPolySeq, EntitySrcGen, EntitySrcNat, Entry, EntryLink, Exptl, ExptlCrystal, ExptlCrystalFace, ExptlCrystalGrow, ExptlCrystalGrowComp, Geom, GeomAngle, GeomBond, GeomContact, GeomHbond, GeomTorsion, Ihm2demClassAverageFitting, Ihm2demClassAverageRestraint, Ihm3demRestraint, IhmCrossLinkList, IhmCrossLinkRestraint, IhmCrossLinkResult, IhmCrossLinkResultParameters, IhmDatasetExternalReference, IhmDatasetGroup, IhmDatasetList, IhmDatasetRelatedDbReference, IhmDerivedDistanceRestraint, IhmEnsembleInfo, IhmExternalFiles, IhmExternalReferenceInfo, IhmFeatureList, IhmGaussianObjEnsemble, IhmGaussianObjSite, IhmGeometricObjectAxis, IhmGeometricObjectCenter, IhmGeometricObjectDistanceRestraint, IhmGeometricObjectHalfTorus, IhmGeometricObjectList, IhmGeometricObjectPlane, IhmGeometricObjectSphere, IhmGeometricObjectTorus, IhmGeometricObjectTransformation, IhmHydroxylRadicalFpRestraint, IhmInterfaceResidueFeature, IhmLocalizationDensityFiles, IhmModelingPostProcess, IhmModelingProtocol, IhmModelList, IhmModelRepresentation, IhmModelRepresentative, IhmMultiStateModeling, IhmNonPolyFeature, IhmOrderedEnsemble, IhmPolyAtomFeature, IhmPolyResidueFeature, IhmPredictedContactRestraint, IhmPseudoSiteFeature, IhmRelatedDatasets, IhmResiduesNotModeled, IhmSasRestraint, IhmSphereObjSite, IhmStartingComparativeModels, IhmStartingComputationalModels, IhmStartingModelCoord, IhmStartingModelDetails, IhmStartingModelSeqDif, IhmStructAssembly, IhmStructAssemblyClass, IhmStructAssemblyClassList, IhmStructAssemblyDetails, Journal, JournalIndex, NdbOriginalNdbCoordinates, NdbStructConfNa, NdbStructFeatureNa, NdbStructNaBasePair, NdbStructNaBasePairStep, PdbxAtlas, PdbxAtomSiteAnisoTls, PdbxAudit, PdbxAuditAuthor, PdbxAuditConformExtension, PdbxAuditRevisionCategory, PdbxAuditRevisionDetails, PdbxAuditRevisionGroup, PdbxAuditRevisionHistory, PdbxAuditRevisionItem, PdbxAuditSupport, PdbxBondDistanceLimits, PdbxBranchScheme, PdbxBuffer, PdbxBufferComponents, PdbxChemCompAtomEdit, PdbxChemCompAtomFeature, PdbxChemCompAtomRelated, PdbxChemCompAudit, PdbxChemCompBondEdit, PdbxChemCompDepositorInfo, PdbxChemCompDescriptor, PdbxChemCompFeature, PdbxChemCompIdentifier, PdbxChemCompImport, PdbxChemCompInstanceDepositorInfo, PdbxChemCompModel, PdbxChemCompModelAtom, PdbxChemCompModelAudit, PdbxChemCompModelBond, PdbxChemCompModelDescriptor, PdbxChemCompModelFeature, PdbxChemCompModelReference, PdbxChemCompNonstandard, PdbxChemCompRelated, PdbxChemCompSubcomponentEntityList, PdbxChemCompSubcomponentStructConn, PdbxChemCompSynonyms, PdbxChemCompUploadDepositorInfo, PdbxColumninfo, PdbxConnect, PdbxConnectAtom, PdbxConnectModification, PdbxConnectType, PdbxConstruct, PdbxConstructFeature, PdbxContactAuthor, PdbxCoord, PdbxCoordinateModel, PdbxCrystalAlignment, PdbxDatabaseMessage, PdbxDatabasePDBMaster, PdbxDatabasePDBObsSpr, PdbxDatabasePdbOmit, PdbxDatabaseProc, PdbxDatabaseRelated, PdbxDatabaseRemark, PdbxDatabaseStatus, PdbxDatabaseStatusHistory, PdbxDataProcessingCell, PdbxDataProcessingDetector, PdbxDataProcessingReflns, PdbxDataProcessingStatus, PdbxDbref, PdbxDccDensity, PdbxDccDensityCorr, PdbxDccGeometry, PdbxDccMap, PdbxDccMapman, PdbxDccRsccMapman, PdbxDccRsccMapmanOverall, PdbxDepositGroup, PdbxDepositGroupIndex, PdbxDepositionMessageFileReference, PdbxDepositionMessageInfo, PdbxDepuiEntityFeatures, PdbxDepuiEntityStatusFlags, PdbxDepuiEntryDetails, PdbxDepuiStatusFlags, PdbxDepuiUpload, PdbxDepuiValidationStatusFlags, PdbxDiffrnReflnsShell, PdbxDistantSolventAtoms, PdbxDomain, PdbxDomainRange, PdbxDrugInfo, PdbxEntityAssembly, PdbxEntityBranch, PdbxEntityBranchLink, PdbxEntityBranchList, PdbxEntityDescriptor, PdbxEntityFuncBindMode, PdbxEntityFuncEnzyme, PdbxEntityFuncOther, PdbxEntityFuncRegulatory, PdbxEntityFuncStructural, PdbxEntityInstanceFeature, PdbxEntityName, PdbxEntityNameInstance, PdbxEntityNameTaxonomy, PdbxEntityNameTaxonomyTree, PdbxEntityNonpoly, PdbxEntityPolyCompLinkList, PdbxEntityPolyDomain, PdbxEntityPolyNaNonstandard, PdbxEntityPolyNaType, PdbxEntityPolyProteinClass, PdbxEntityProdProtocol, PdbxEntitySrcGenCharacter, PdbxEntitySrcGenChrom, PdbxEntitySrcGenClone, PdbxEntitySrcGenCloneLigation, PdbxEntitySrcGenCloneRecombination, PdbxEntitySrcGenDepositorInfo, PdbxEntitySrcGenExpress, PdbxEntitySrcGenExpressTimepoint, PdbxEntitySrcGenFract, PdbxEntitySrcGenLysis, PdbxEntitySrcGenProdDigest, PdbxEntitySrcGenProdOther, PdbxEntitySrcGenProdOtherParameter, PdbxEntitySrcGenProdPcr, PdbxEntitySrcGenProteolysis, PdbxEntitySrcGenPure, PdbxEntitySrcGenRefold, PdbxEntitySrcSyn, PdbxEntryDetails, PdbxExptlCrystalCryoTreatment, PdbxExptlCrystalGrowComp, PdbxExptlCrystalGrowSol, PdbxExptlPd, PdbxFamilyGroupIndex, PdbxFamilyPrdAudit, PdbxFeatureAssembly, PdbxFeatureDomain, PdbxFeatureEntry, PdbxFeatureMonomer, PdbxFeatureSequenceRange, PdbxHelicalSymmetry, PdbxHelicalSymmetryDepositorInfo, PdbxHybrid, PdbxInhibitorInfo, PdbxIonInfo, PdbxLinkedEntity, PdbxLinkedEntityInstanceList, PdbxLinkedEntityLinkList, PdbxLinkedEntityList, PdbxMissingAtomNonpoly, PdbxMissingAtomPoly, PdbxMissingResidueList, PdbxMolecule, PdbxMoleculeFeatures, PdbxMoleculeFeaturesDepositorInfo, PdbxNaStrandInfo, PdbxNaStructKeywds, PdbxNmrAssignedChemShiftList, PdbxNmrChemShiftExperiment, PdbxNmrChemShiftRef, PdbxNmrChemShiftReference, PdbxNmrChemShiftSoftware, PdbxNmrComputing, PdbxNmrConstraintFile, PdbxNmrConstraints, PdbxNmrDetails, PdbxNmrEnsemble, PdbxNmrEnsembleRms, PdbxNmrExptl, PdbxNmrExptlSample, PdbxNmrExptlSampleConditions, PdbxNmrForceConstants, PdbxNmrRefine, PdbxNmrRepresentative, PdbxNmrSampleDetails, PdbxNmrSoftware, PdbxNmrSoftwareTask, PdbxNmrSpectralDim, PdbxNmrSpectralPeakList, PdbxNmrSpectralPeakSoftware, PdbxNmrSpectrometer, PdbxNmrSystematicChemShiftOffset, PdbxNmrUpload, PdbxNonpolyScheme, PdbxNonstandardList, PdbxPdbCompnd, PdbxPdbSource, PdbxPhasingDm, PdbxPhasingDmShell, PdbxPhasingMADSet, PdbxPhasingMADSetShell, PdbxPhasingMADSetSite, PdbxPhasingMADShell, PdbxPhasingMR, PdbxPointSymmetry, PdbxPointSymmetryDepositorInfo, PdbxPolySeqScheme, PdbxPostProcessDetails, PdbxPostProcessStatus, PdbxPrdAudit, PdbxPrereleaseSeq, PdbxProteinInfo, PdbxReferenceEntityLink, PdbxReferenceEntityList, PdbxReferenceEntityNonpoly, PdbxReferenceEntityPoly, PdbxReferenceEntityPolyLink, PdbxReferenceEntityPolySeq, PdbxReferenceEntitySequence, PdbxReferenceEntitySrcNat, PdbxReferenceEntitySubcomponents, PdbxReferenceLinkedEntity, PdbxReferenceLinkedEntityCompLink, PdbxReferenceLinkedEntityCompList, PdbxReferenceLinkedEntityLink, PdbxReferenceMolecule, PdbxReferenceMoleculeAnnotation, PdbxReferenceMoleculeDetails, PdbxReferenceMoleculeFamily, PdbxReferenceMoleculeFeatures, PdbxReferenceMoleculeList, PdbxReferenceMoleculeRelatedStructures, PdbxReferenceMoleculeSynonyms, PdbxReferencePublicationList, PdbxRefine, PdbxRefineAuxFile, PdbxRefineComponent, PdbxRefineLsRestrNcs, PdbxRefineTls, PdbxRefineTlsGroup, PdbxReflnsTwin, PdbxRelatedExpDataSet, PdbxRemediationAtomSiteMapping, PdbxReRefinement, PdbxRmchOutlier, PdbxRmsDevsCovalent, PdbxRmsDevsCovByMonomer, PdbxRobotSystem, PdbxSeqMapDepositorInfo, PdbxSequenceAnnotation, PdbxSequencePattern, PdbxSequenceRange, PdbxSerialCrystallographyDataReduction, PdbxSerialCrystallographyMeasurement, PdbxSerialCrystallographySampleDelivery, PdbxSerialCrystallographySampleDeliveryFixedTarget, PdbxSerialCrystallographySampleDeliveryInjection, PdbxSGProject, PdbxSolnScatter, PdbxSolnScatterModel, PdbxSolventAtomSiteMapping, PdbxSolventInfo, PdbxSource, PdbxStereochemistry, PdbxStructAssembly, PdbxStructAssemblyAuthClassification, PdbxStructAssemblyAuthEvidence, PdbxStructAssemblyAuthEvidenceDepositorInfo, PdbxStructAssemblyDepositorInfo, PdbxStructAssemblyGen, PdbxStructAssemblyGenDepositorInfo, PdbxStructAssemblyProp, PdbxStructAssemblyPropDepositorInfo, PdbxStructAsymGen, PdbxStructBiolFunc, PdbxStructChemCompDiagnostics, PdbxStructChemCompFeature, PdbxStructConnAngle, PdbxStructEntityInst, PdbxStructGroupComponentRange, PdbxStructGroupComponents, PdbxStructGroupList, PdbxStructInfo, PdbxStructLegacyOperList, PdbxStructLink, PdbxStructModResidue, PdbxStructMsymGen, PdbxStructNcsVirusGen, PdbxStructOperList, PdbxStructOperListDepositorInfo, PdbxStructPackGen, PdbxStructRefSeqDeletion, PdbxStructRefSeqDepositorInfo, PdbxStructRefSeqDifDepositorInfo, PdbxStructRefSeqFeature, PdbxStructRefSeqFeatureProp, PdbxStructRefSeqInsertion, PdbxStructSheetHbond, PdbxStructSpecialSymmetry, PdbxSugarPhosphateGeometry, PdbxSummaryFlags, PdbxSupportingExpDataSet, PdbxTableinfo, PdbxTrnaInfo, PdbxUnobsOrZeroOccAtoms, PdbxUnobsOrZeroOccResidues, PdbxUnpair, PdbxValAngle, PdbxValBond, PdbxValChiral, PdbxValContact, PdbxValidateChiral, PdbxValidateCloseContact, PdbxValidateMainChainPlane, PdbxValidatePeptideOmega, PdbxValidatePlanes, PdbxValidatePlanesAtom, PdbxValidatePolymerLinkage, PdbxValidateRmsdAngle, PdbxValidateRmsdBond, PdbxValidateSymmContact, PdbxValidateTorsion, PdbxValSymContact, PdbxVersion, PdbxViewCategory, PdbxViewCategoryGroup, PdbxViewItem, PdbxVirtualAngle, PdbxVirtualBond, PdbxVirtualTorsion, PdbxXplorFile, Phasing, PhasingAveraging, PhasingIsomorphous, PhasingMAD, PhasingMADClust, PhasingMADExpt, PhasingMADRatio, PhasingMADSet, PhasingMIR, PhasingMIRDer, PhasingMIRDerRefln, PhasingMIRDerShell, PhasingMIRDerSite, PhasingMIRShell, PhasingSet, PhasingSetRefln, ProxyCategory, Publ, PublAuthor, PublBody, PublManuscriptIncl, Refine, RefineAnalyze, RefineBIso, RefineFunctMinimized, RefineHist, RefineLsClass, RefineLsRestr, RefineLsRestrNcs, RefineLsRestrType, RefineLsShell, RefineOccupancy, Refln, Reflns, ReflnsClass, ReflnsScale, ReflnsShell, ReflnSysAbs, Software, SpaceGroup, SpaceGroupSymop, Struct, StructAsym, StructBiol, StructBiolGen, StructBiolKeywords, StructBiolView, StructConf, StructConfType, StructConn, StructConnType, StructKeywords, StructMonDetails, StructMonNucl, StructMonProt, StructMonProtCis, StructNcsDom, StructNcsDomLim, StructNcsEns, StructNcsEnsGen, StructNcsOper, StructRef, StructRefSeq, StructRefSeqDif, StructSheet, StructSheetHbond, StructSheetOrder, StructSheetRange, StructSheetTopology, StructSite, StructSiteGen, StructSiteKeywords, StructSiteView, Symmetry, SymmetryEquiv, ValenceParam, ValenceRef

public interface Category

The base of all Category implementations. Provides access to child columns.

Method Summary

Modifier and Type	Method	Description
default Stream<String>	columnNames()	Traverse all names of present columns.
default Stream<Column>	columns()	Traverse all present columns.
default Category	get()	A hook to explicitly request this category (it may be wrapped as ProxyCategory).
String	getCategoryName()	The name of this Category.
Column	getColumn(String name)	Retrieve a specific Column by name.
List<String>	getColumnNames()	Names of all present columns.
int	getRowCount()	The number of rows in this Category.
boolean	isDefined()	States whether this Category is defined.

Method Detail

getCategoryName

String getCategoryName()

The name of this Category.

Returns:

String of the name

getRowCount

int getRowCount()

The number of rows in this Category. 0 for undefined categories.

Returns:

the number of rows

getColumn

Column getColumn(String name)

Retrieve a specific Column by name.

Parameters:

name - the column name

Returns:

the Column, empty BaseColumn if no column of that name exists

getColumnNames

List<String> getColumnNames()

Names of all present columns.

Returns:

a collection of Column names

columnNames

default Stream<String> columnNames()

Traverse all names of present columns.

Returns:

a Stream of present Column names

columns

default Stream<Column> columns()

Traverse all present columns.

Returns:

a Stream of all present columns

isDefined

boolean isDefined()

States whether this Category is defined.

Returns:

true if this Category contains data

get

default Category get()

A hook to explicitly request this category (it may be wrapped as ProxyCategory).

Returns:

the resolved category which the correct type