<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <groupId>org.phenopackets.phenopackettools</groupId>
    <artifactId>phenopacket-tools</artifactId>
    <version>1.0.0-RC1</version>

    <name>Phenopacket-tools</name>
    <description>An app and library for building, conversion and validation of GA4GH Phenopackets</description>
    <packaging>pom</packaging>

    <url>https://phenopackets.org/phenopacket-tools</url>

    <prerequisites>
        <maven>3.6.0</maven>
    </prerequisites>

    <modules>
        <module>phenopacket-tools-core</module>
        <module>phenopacket-tools-test</module>
        <module>phenopacket-tools-util</module>
        <module>phenopacket-tools-builder</module>
        <module>phenopacket-tools-validator-core</module>
        <module>phenopacket-tools-validator-jsonschema</module>
        <module>phenopacket-tools-converter</module>
        <module>phenopacket-tools-io</module>
        <module>phenopacket-tools-cli</module>
    </modules>

    <parent>
        <groupId>org.springframework.boot</groupId>
        <artifactId>spring-boot-starter-parent</artifactId>
        <version>2.6.3</version>
        <relativePath/> <!-- lookup parent from repository -->
    </parent>



    <licenses>
        <license>
            <name>The 3-Clause BSD License</name>
            <url>https://opensource.org/licenses/BSD-3-Clause</url>
            <distribution>repo</distribution>
        </license>
    </licenses>

    <developers>
        <developer>
            <name>Peter Robinson</name>
            <email>peter.robinson@jax.org</email>
            <organization>The Jackson Laboratory</organization>
            <organizationUrl>https://www.jax.org/</organizationUrl>
        </developer>
        <developer>
            <name>Daniel Danis</name>
            <email>daniel.danis@jax.org</email>
            <organization>The Jackson Laboratory</organization>
            <organizationUrl>https://www.jax.org/</organizationUrl>
        </developer>
        <developer>
            <name>Jules Jacobsen</name>
            <email>j.jacobsen@qmul.ac.uk</email>
            <organization>Queen Mary University of London</organization>
            <organizationUrl>https://www.qmul.ac.uk/</organizationUrl>
        </developer>
    </developers>

    <scm>
        <connection>scm:git:https://github.com/phenopackets/phenopacket-tools.git</connection>
        <developerConnection>scm:git:ssh://github.com:phenopackets/phenopacket-tools.git</developerConnection>
        <url>https://github.com/phenopackets/phenopacket-tools</url>
        <tag>v${project.version}</tag>
    </scm>

    <distributionManagement>
        <repository>
            <id>ossrh</id>
            <url>https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
        </repository>
        <snapshotRepository>
            <id>ossrh</id>
            <url>https://oss.sonatype.org/content/repositories/snapshots</url>
        </snapshotRepository>
    </distributionManagement>

    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
        <java.version>17</java.version>
        <protobuf.version>3.21.8</protobuf.version>
        <phenopacket-schema.version>2.0.2</phenopacket-schema.version>
        <jackson.version>2.13.4.2</jackson.version>
        <!-- TODO - merge with `jackson.version` as soon as a next minor/patch version becomes available. -->
        <jackson.core.version>2.13.4</jackson.core.version>
        <snakeyaml.version>1.33</snakeyaml.version>
        <phenol.version>2.0.0-RC3</phenol.version>
        <junit.jupiter.version>5.7.1</junit.jupiter.version>
    </properties>

    <build>
        <pluginManagement>
            <plugins>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-compiler-plugin</artifactId>
                    <version>3.8.0</version>
                    <configuration>
                        <source>${java.version}</source>
                        <target>${java.version}</target>
                    </configuration>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-surefire-plugin</artifactId>
                    <version>3.0.0-M5</version>
                    <configuration>
                        <useModulePath>false</useModulePath>
                    </configuration>
                </plugin>
                <plugin>
                    <groupId>org.springframework.boot</groupId>
                    <artifactId>spring-boot-maven-plugin</artifactId>
                </plugin>
            </plugins>
        </pluginManagement>
        <plugins>
            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>versions-maven-plugin</artifactId>
                <version>2.7</version>
                <configuration>
                    <generateBackupPoms>false</generateBackupPoms>
                </configuration>
            </plugin>
        </plugins>
    </build>

    <dependencyManagement>
        <dependencies>
            <!-- https://mvnrepository.com/artifact/org.phenopackets/phenopacket-schema -->
            <dependency>
                <groupId>org.phenopackets</groupId>
                <artifactId>phenopacket-schema</artifactId>
                <version>${phenopacket-schema.version}</version>
            </dependency>
            <dependency>
                <groupId>com.google.protobuf</groupId>
                <artifactId>protobuf-java</artifactId>
                <version>${protobuf.version}</version>
            </dependency>
            <dependency>
                <groupId>com.google.protobuf</groupId>
                <artifactId>protobuf-java-util</artifactId>
                <version>${protobuf.version}</version>
            </dependency>
            <dependency>
                <groupId>com.fasterxml.jackson.core</groupId>
                <artifactId>jackson-core</artifactId>
                <version>${jackson.core.version}</version>
            </dependency>
            <dependency>
                <groupId>com.fasterxml.jackson.core</groupId>
                <artifactId>jackson-databind</artifactId>
                <version>${jackson.version}</version>
            </dependency>
            <dependency>
                <groupId>com.fasterxml.jackson.dataformat</groupId>
                <artifactId>jackson-dataformat-yaml</artifactId>
                <version>${jackson.core.version}</version>
            </dependency>
            <dependency>
                <groupId>com.google.guava</groupId>
                <artifactId>guava</artifactId>
                <version>31.1-android</version>
            </dependency>
            <dependency>
                <groupId>com.google.errorprone</groupId>
                <artifactId>error_prone_annotations</artifactId>
                <version>2.11.0</version>
            </dependency>
            <dependency>
                <groupId>com.networknt</groupId>
                <artifactId>json-schema-validator</artifactId>
                <version>1.0.72</version>
            </dependency>
            <dependency>
                <groupId>org.monarchinitiative.phenol</groupId>
                <artifactId>phenol-core</artifactId>
                <version>${phenol.version}</version>
            </dependency>
            <dependency>
                <groupId>org.monarchinitiative.phenol</groupId>
                <artifactId>phenol-io</artifactId>
                <version>${phenol.version}</version>
            </dependency>
            <dependency>
                <groupId>org.yaml</groupId>
                <artifactId>snakeyaml</artifactId>
                <version>${snakeyaml.version}</version>
            </dependency>
            <dependency>
                <groupId>org.apache.commons</groupId>
                <artifactId>commons-csv</artifactId>
                <version>1.9.0</version>
            </dependency>
            <dependency>
                <groupId>info.picocli</groupId>
                <artifactId>picocli</artifactId>
                <version>4.6.3</version>
            </dependency>
        </dependencies>
    </dependencyManagement>
    <dependencies>
        <!-- logging -->
        <dependency>
            <groupId>org.slf4j</groupId>
            <artifactId>slf4j-api</artifactId>
        </dependency>
        <dependency>
            <groupId>org.slf4j</groupId>
            <artifactId>slf4j-simple</artifactId>
            <scope>test</scope>
        </dependency>
        <!-- TEST DEPENDENCIES -->
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.hamcrest</groupId>
            <artifactId>hamcrest-core</artifactId>
            <scope>test</scope>
        </dependency>
    </dependencies>

    <profiles>
        <profile>
            <!-- This profile should be activated only during local install or deploying a release. -->
            <!-- The GPG plugin is used to sign the artifacts. Note that you need to set up your GPG key first. -->
            <!-- Activate the profile by running e.g. `./mvnw -Prelease clean deploy` -->
            <id>release</id>
            <build>
                <pluginManagement>
                    <plugins>
                        <plugin>
                            <groupId>org.apache.maven.plugins</groupId>
                            <artifactId>maven-source-plugin</artifactId>
                            <version>2.2.1</version>
                            <executions>
                                <execution>
                                    <id>attach-sources</id>
                                    <goals>
                                        <goal>jar-no-fork</goal>
                                    </goals>
                                </execution>
                            </executions>
                        </plugin>

                        <plugin>
                            <groupId>org.apache.maven.plugins</groupId>
                            <artifactId>maven-javadoc-plugin</artifactId>
                            <version>3.3.1</version>
                            <configuration>
                                <javadocExecutable>${java.home}/bin/javadoc</javadocExecutable>
                                <doclint>none</doclint>
                                <quiet>true</quiet>
                            </configuration>
                            <executions>
                                <execution>
                                    <!-- Prepare Javadoc JARs for Maven Central. -->
                                    <id>attach-javadocs</id>
                                    <goals>
                                        <goal>jar</goal>
                                    </goals>
                                </execution>
                                <execution>
                                    <!-- Aggregate Javadoc for hosting at the project site. -->
                                    <id>aggregate</id>
                                    <goals>
                                        <goal>aggregate</goal>
                                    </goals>
                                    <phase>package</phase>
                                    <inherited>false</inherited>
                                </execution>
                            </executions>
                        </plugin>
                        <plugin>
                            <groupId>org.apache.maven.plugins</groupId>
                            <artifactId>maven-release-plugin</artifactId>
                            <version>3.0.0-M5</version>
                        </plugin>
                        <plugin>
                            <!-- override version of GPG plugin to use new GPG signing features -->
                            <groupId>org.apache.maven.plugins</groupId>
                            <artifactId>maven-gpg-plugin</artifactId>
                            <version>1.6</version>
                            <executions>
                                <execution>
                                    <id>sign-artifacts</id>
                                    <phase>verify</phase>
                                    <goals>
                                        <goal>sign</goal>
                                    </goals>
                                </execution>
                            </executions>
                        </plugin>
                        <plugin>
                            <groupId>org.apache.maven.plugins</groupId>
                            <artifactId>maven-deploy-plugin</artifactId>
                            <version>3.0.0-M2</version>
                        </plugin>
                    </plugins>
                </pluginManagement>
                <plugins>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-gpg-plugin</artifactId>
                    </plugin>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-source-plugin</artifactId>
                    </plugin>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-javadoc-plugin</artifactId>
                    </plugin>
                </plugins>
            </build>
        </profile>
    </profiles>

</project>