<?xml version="1.0"?>
<!--
  ~ Copyright 2015-2017 OpenCB
  ~
  ~ Licensed under the Apache License, Version 2.0 (the "License");
  ~ you may not use this file except in compliance with the License.
  ~ You may obtain a copy of the License at
  ~
  ~     http://www.apache.org/licenses/LICENSE-2.0
  ~
  ~ Unless required by applicable law or agreed to in writing, software
  ~ distributed under the License is distributed on an "AS IS" BASIS,
  ~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  ~ See the License for the specific language governing permissions and
  ~ limitations under the License.
  -->

<project xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"
        xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
    <modelVersion>4.0.0</modelVersion>

    <parent>
        <groupId>org.opencb.biodata</groupId>
        <artifactId>biodata</artifactId>
        <version>1.2.2</version>
        <relativePath>../pom.xml</relativePath>
    </parent>

    <groupId>org.opencb.biodata</groupId>
    <artifactId>biodata-models</artifactId>
    <version>${biodata.version}</version>

    <dependencies>
        <dependency>
            <groupId>org.opencb.commons</groupId>
            <artifactId>commons-lib</artifactId>
        </dependency>
        <dependency>
            <groupId>org.opencb.ga4gh</groupId>
            <artifactId>ga4gh</artifactId>
        </dependency>

        <dependency>
            <groupId>com.github.samtools</groupId>
            <artifactId>htsjdk</artifactId>
        </dependency>
        <dependency>
            <groupId>org.apache.avro</groupId>
            <artifactId>avro</artifactId>
        </dependency>
        <dependency>
            <groupId>com.google.protobuf</groupId>
            <artifactId>protobuf-java</artifactId>
        </dependency>
        <dependency>
            <groupId>io.grpc</groupId>
            <artifactId>grpc-all</artifactId>
        </dependency>
        <dependency>
            <groupId>org.biojava</groupId>
            <artifactId>biojava-alignment</artifactId>
            <exclusions>
                <exclusion>
                    <groupId>org.apache.logging.log4j</groupId>
                    <artifactId>log4j-slf4j-impl</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>junit</groupId>
            <artifactId>junit</artifactId>
            <scope>test</scope>
        </dependency>
    </dependencies>

    <build>
        <resources>
            <resource>
                <directory>src/main/resources</directory>
            </resource>
            <resource>
                <directory>src/main/avro</directory>
                <targetPath>avro</targetPath>
            </resource>
        </resources>
        <extensions>
            <extension>
                <groupId>kr.motd.maven</groupId>
                <artifactId>os-maven-plugin</artifactId>
                <version>1.4.0.Final</version>
            </extension>
        </extensions>
        <plugins>
            <plugin>
                <groupId>org.apache.avro</groupId>
                <artifactId>avro-maven-plugin</artifactId>
                <version>1.7.7</version>
                <executions>
                    <execution>
                        <id>schemas</id>
                        <phase>generate-sources</phase>
                        <goals>
                            <goal>schema</goal>
                            <goal>protocol</goal>
                            <goal>idl-protocol</goal>
                        </goals>
                        <configuration>
                            <fieldVisibility>private</fieldVisibility>
                            <stringType>String</stringType>
                            <sourceDirectory>${project.basedir}/src/main/avro/</sourceDirectory>
                            <testSourceDirectory>${project.basedir}/src/test/avro/</testSourceDirectory>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.xolstice.maven.plugins</groupId>
                <artifactId>protobuf-maven-plugin</artifactId>
                <version>0.5.0</version>
                <configuration>
                    <!--
                      The version of protoc must match protobuf-java. If you don't depend on
                      protobuf-java directly, you will be transitively depending on the
                      protobuf-java version that grpc depends on.
                    -->
                    <protocArtifact>com.google.protobuf:protoc:${protobuf.version}:exe:${os.detected.classifier}</protocArtifact>
                    <pluginId>grpc-java</pluginId>
                    <pluginArtifact>io.grpc:protoc-gen-grpc-java:${grpc.version}:exe:${os.detected.classifier}</pluginArtifact>
                </configuration>
                <executions>
                    <execution>
                        <goals>
                            <goal>compile</goal>
                            <goal>compile-custom</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-jar-plugin</artifactId>
                <version>2.6</version>
                <executions>
                    <execution>
                        <id>test-jar</id>
                        <goals>
                            <goal>test-jar</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
        </plugins>

        <pluginManagement>
            <plugins>
                <!--This plugin's configuration is used to store Eclipse m2e settings
                    only. It has no influence on the Maven build itself. -->
                <plugin>
                    <groupId>org.eclipse.m2e</groupId>
                    <artifactId>lifecycle-mapping</artifactId>
                    <version>1.0.0</version>
                    <configuration>
                        <lifecycleMappingMetadata>
                            <pluginExecutions>
                                <pluginExecution>
                                    <pluginExecutionFilter>
                                        <groupId>
                                            org.apache.avro
                                        </groupId>
                                        <artifactId>
                                            avro-maven-plugin
                                        </artifactId>
                                        <versionRange>
                                            [1.7.7,)
                                        </versionRange>
                                        <goals>
                                            <goal>protocol</goal>
                                            <goal>schema</goal>
                                        </goals>
                                    </pluginExecutionFilter>
                                    <action>
                                        <ignore></ignore>
                                    </action>
                                </pluginExecution>
                            </pluginExecutions>
                        </lifecycleMappingMetadata>
                    </configuration>
                </plugin>
            </plugins>
        </pluginManagement>
    </build>

</project>
