<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
  <modelVersion>4.0.0</modelVersion>

  <parent>
    <groupId>org.monarchinitiative.phenol</groupId>
    <artifactId>phenol</artifactId>
    <version>2.0.0-RC4</version>
  </parent>

  <artifactId>phenol-cli</artifactId>
  <name>phenol-cli</name>

  <description>phenol-cli gives command line access to phenol</description>

  <dependencies>
    <dependency>
      <groupId>org.monarchinitiative.phenol</groupId>
      <artifactId>phenol-analysis</artifactId>
      <version>${project.parent.version}</version>
    </dependency>
    <dependency>
      <groupId>org.monarchinitiative.phenol</groupId>
      <artifactId>phenol-io</artifactId>
      <version>${project.parent.version}</version>
    </dependency>
    <dependency>
      <groupId>info.picocli</groupId>
      <artifactId>picocli</artifactId>
    </dependency>
  </dependencies>

  <profiles>
    <profile>
      <id>release-sign-artifacts</id>
      <build>
        <resources>
          <resource>
            <directory>src/main/resources</directory>
            <filtering>true</filtering>
          </resource>
        </resources>
        <plugins>
          <plugin>
            <groupId>org.apache.maven.plugins</groupId>
            <artifactId>maven-dependency-plugin</artifactId>
            <version>3.1.2</version>
            <executions>
              <execution>
                <id>copy-dependencies</id>
                <phase>package</phase>
                <goals>
                  <goal>copy-dependencies</goal>
                </goals>
                <configuration>
                  <includeScope>compile</includeScope>
                  <outputDirectory>${project.build.directory}/lib</outputDirectory>
                </configuration>
              </execution>
            </executions>
          </plugin>
          <!-- Make an executable jar and specify the main class and classpath -->
          <plugin>
            <groupId>org.apache.maven.plugins</groupId>
            <artifactId>maven-jar-plugin</artifactId>
            <configuration>
              <archive>
                <manifest>
                  <addClasspath>true</addClasspath>
                  <classpathPrefix>lib/</classpathPrefix>
                  <mainClass>org.monarchinitiative.phenol.cli.Main</mainClass>
                </manifest>
              </archive>
            </configuration>
          </plugin>
        </plugins>
      </build>
    </profile>
  </profiles>
</project>
