<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<parent>
		<groupId>org.molgenis</groupId>
		<artifactId>molgenis</artifactId>
		<version>1.21.1</version>
	</parent>
	<artifactId>molgenis-app</artifactId>
	<packaging>war</packaging>

	<build>
		<resources>
			<resource>
				<directory>${project.basedir}/src/main/resources</directory>
				<filtering>true</filtering>
			</resource>
		</resources>
		<plugins>
			<!-- minify resources -->
			<plugin>
				<groupId>com.samaxes.maven</groupId>
				<artifactId>minify-maven-plugin</artifactId>
			</plugin>
			<!-- servlet container -->
			<plugin>
				<groupId>org.eclipse.jetty</groupId>
				<artifactId>jetty-maven-plugin</artifactId>
				<version>9.2.6.v20141205</version>
				<configuration>
					<stopPort>8079</stopPort>
					<stopKey>jetty-stop</stopKey>
					<reload>manual</reload>
					<systemProperties>
						<systemProperty>
							<name>molgenis.home</name>
							<value>${user.home}${file.separator}.molgenis${file.separator}omx</value>
						</systemProperty>
					</systemProperties>
					<webAppConfig>
						<contextPath>/</contextPath>
						<baseResource implementation="org.eclipse.jetty.util.resource.ResourceCollection">
							<resourcesAsCSV>${basedir}/src/main/resources</resourcesAsCSV>
						</baseResource>
						<webInfIncludeJarPattern>.*/molgenis-[^/]*\.jar$|.*spring-[^/]*\.jar$
						</webInfIncludeJarPattern>
					</webAppConfig>
				</configuration>
				<dependencies>
					<dependency>
						<groupId>mysql</groupId>
						<artifactId>mysql-connector-java</artifactId>
						<version>${mysql.connector.java.version}</version>
					</dependency>
				</dependencies>
			</plugin>
		</plugins>
		<pluginManagement>
			<plugins>
				<!-- web server -->
				<plugin>
					<groupId>org.mortbay.jetty</groupId>
					<artifactId>jetty-maven-plugin</artifactId>
				</plugin>
			</plugins>
		</pluginManagement>
	</build>

	<dependencies>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-core</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-data</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-core-ui</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-security</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.springframework.security</groupId>
			<artifactId>spring-security-web</artifactId>
			<version>${spring.security.version}</version>
		</dependency>
		<dependency>
			<groupId>org.springframework.security</groupId>
			<artifactId>spring-security-config</artifactId>
			<version>${spring.security.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-dataexplorer</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-pathways</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-data-excel</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-data-csv</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-data-googlespreadsheet</artifactId>
			<version>${project.version}</version>
			<exclusions>
				<exclusion>
					<artifactId>servlet-api</artifactId>
					<groupId>org.mortbay.jetty</groupId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-python</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-r</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-data-annotators</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-charts</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-data-rest</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-data-merge</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-jobs</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-data-vcf</artifactId>
			<version>${project.version}</version>
			<exclusions>
				<exclusion>
					<artifactId>log4j</artifactId>
					<groupId>log4j</groupId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-data-mapper</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-data-import</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-data-mysql</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-data-elasticsearch</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-data-idcard</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-aop</artifactId>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-context-support</artifactId>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-webmvc</artifactId>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-das</artifactId>
			<version>${project.version}</version>
			<exclusions>
				<exclusion>
					<artifactId>log4j</artifactId>
					<groupId>log4j</groupId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-model-registry</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-ontology</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-data-semanticsearch</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-data-migrate</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-questionnaires</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-catalogue</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-scripts</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-file-ingester</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-gavin</artifactId>
			<version>${project.version}</version>
		</dependency>
	</dependencies>
</project>
