org.micromanager.acqj.main

Class AcqEngMetadata

java.lang.Object

org.micromanager.acqj.main.AcqEngMetadata

public class AcqEngMetadata
extends Object

Convenience/standardization for Acq Engine metadata

Field Summary

Fields

Modifier and Type	Field and Description
static String	AFFINE_TRANSFORM
static String	AXES
static String	AXES_GRID_COL
static String	AXES_GRID_ROW
static String	BIT_DEPTH
static String	CHANNEL_AXIS
static String	CHANNEL_GROUP
static String	CHANNEL_NAME
static String	CORE_AUTOFOCUS_DEVICE
static String	CORE_CAMERA
static String	CORE_FOCUS
static String	CORE_GALVO
static String	CORE_IMAGE_PROCESSOR
static String	CORE_SHUTTER
static String	CORE_SLM
static String	CORE_XYSTAGE
static String	DATE_TIME
static String	ELAPSED_TIME_MS
static String	EXPLORE_ACQUISITION
static String	EXPOSURE
static String	GENERIC_UM_INTENDED_SUFFIX
static String	HEIGHT
static String	INITIAL_POS_LIST
static String	OVERLAP_X
static String	OVERLAP_Y
static String	PIX_SIZE
static String	PIX_TYPE
static String	PIX_TYPE_GRAY16
static String	PIX_TYPE_GRAY8
static String	POS_NAME
static String	POSITION_AXIS
static String	SAVING_PREFIX
static String	TAGS
static String	TIME
static String	TIME_AXIS
static String	TIMELAPSE_INTERVAL
static String	WIDTH
static String	X_UM
static String	X_UM_INTENDED
static String	Y_UM
static String	Y_UM_INTENDED
static String	Z_AXIS
static String	Z_STEP_UM
static String	Z_UM
static String	Z_UM_INTENDED
static String	ZC_ORDER

Constructor Summary

Constructors

Constructor and Description
AcqEngMetadata()

Method Summary

Modifier and Type	Method and Description
static void	addImageMetadata(mmcorej.org.json.JSONObject tags, AcquisitionEvent event, long elapsed_ms, double exposure) Add the core set of image metadata that should be present in any acquisition
static mmcorej.org.json.JSONObject	copy(mmcorej.org.json.JSONObject map)
static void	createAxes(mmcorej.org.json.JSONObject tags)
static String	getAcqDate(mmcorej.org.json.JSONObject map)
static AffineTransform	getAffineTransform(mmcorej.org.json.JSONObject summaryMD)
static String	getAffineTransformString(mmcorej.org.json.JSONObject summaryMD)
static HashMap<String,Object>	getAxes(mmcorej.org.json.JSONObject tags)
static mmcorej.org.json.JSONObject	getAxesAsJSON(HashMap<String,Object> axes)
static Object	getAxisPosition(mmcorej.org.json.JSONObject tags, String axis)
static int	getBitDepth(mmcorej.org.json.JSONObject map)
static int	getBytesPerPixel(mmcorej.org.json.JSONObject map)
static String	getChannelGroup(mmcorej.org.json.JSONObject summary)
static String	getCoreAutofocusDevice(mmcorej.org.json.JSONObject summary)
static String	getCoreCamera(mmcorej.org.json.JSONObject summary)
static String	getCoreFocus(mmcorej.org.json.JSONObject map)
static String	getCoreGalvo(mmcorej.org.json.JSONObject summary)
static String	getCoreImageProcessor(mmcorej.org.json.JSONObject summary)
static String	getCoreShutter(mmcorej.org.json.JSONObject summary)
static String	getCoreSLM(mmcorej.org.json.JSONObject summary)
static String	getCoreXY(mmcorej.org.json.JSONObject map)
protected static String	getCurrentDateAndTime()
static int	getDepth(mmcorej.org.json.JSONObject tags)
static long	getElapsedTimeMs(mmcorej.org.json.JSONObject map)
static double	getExposure(mmcorej.org.json.JSONObject map)
static int	getHeight(mmcorej.org.json.JSONObject map)
static String	getImageTime(mmcorej.org.json.JSONObject map)
static int[]	getIndices(String imageLabel)
static double	getIntervalMs(mmcorej.org.json.JSONObject map)
static mmcorej.org.json.JSONArray	getJSONArrayMember(mmcorej.org.json.JSONObject obj, String key)
static String[]	getKeys(mmcorej.org.json.JSONObject md)
static int	getNumberOfComponents(mmcorej.org.json.JSONObject map)
static int	getPixelOverlapX(mmcorej.org.json.JSONObject summaryMD)
static int	getPixelOverlapY(mmcorej.org.json.JSONObject summaryMD)
static double	getPixelSizeUm(mmcorej.org.json.JSONObject map)
static String	getPixelType(mmcorej.org.json.JSONObject map)
static String	getPositionName(mmcorej.org.json.JSONObject map)
static double	getStageX(mmcorej.org.json.JSONObject smd)
static double	getStageXIntended(mmcorej.org.json.JSONObject smd)
static double	getStageY(mmcorej.org.json.JSONObject smd)
static double	getStageYIntended(mmcorej.org.json.JSONObject smd)
static double	getStageZIntended(mmcorej.org.json.JSONObject smd)
static int	getWidth(mmcorej.org.json.JSONObject map)
static boolean	getZCTOrder(mmcorej.org.json.JSONObject map)
static double	getZPositionUm(mmcorej.org.json.JSONObject map)
static double	getZStepUm(mmcorej.org.json.JSONObject map)
boolean	hasAcqDate(mmcorej.org.json.JSONObject map)
static boolean	hasAffineTransformString(mmcorej.org.json.JSONObject map)
static boolean	hasAxis(mmcorej.org.json.JSONObject tags, String axis)
static boolean	hasBitDepth(mmcorej.org.json.JSONObject map)
static boolean	hasChannelGroup(mmcorej.org.json.JSONObject map)
static boolean	hasCoreAutofocus(mmcorej.org.json.JSONObject summary)
static boolean	hasCoreCamera(mmcorej.org.json.JSONObject summary)
static boolean	hasCoreFocus(mmcorej.org.json.JSONObject map)
static boolean	hasCoreGalvo(mmcorej.org.json.JSONObject summary)
static boolean	hasCoreImageProcessor(mmcorej.org.json.JSONObject summary)
static boolean	hasCoreShutter(mmcorej.org.json.JSONObject summary)
static boolean	hasCoreSLM(mmcorej.org.json.JSONObject summary)
static boolean	hasCoreXY(mmcorej.org.json.JSONObject map)
static boolean	hasElapsedTimeMs(mmcorej.org.json.JSONObject map)
boolean	hasExposure(mmcorej.org.json.JSONObject map)
static boolean	hasHeight(mmcorej.org.json.JSONObject map)
boolean	hasImageTime(mmcorej.org.json.JSONObject map)
static boolean	hasIntervalMs(mmcorej.org.json.JSONObject map)
static boolean	hasPixelOverlapX(mmcorej.org.json.JSONObject map)
static boolean	hasPixelOverlapY(mmcorej.org.json.JSONObject map)
static boolean	hasPixelSizeUm(mmcorej.org.json.JSONObject map)
static boolean	hasPixelType(mmcorej.org.json.JSONObject map)
static boolean	hasPositionName(mmcorej.org.json.JSONObject map)
static boolean	hasStageX(mmcorej.org.json.JSONObject map)
static boolean	hasStageXIntended(mmcorej.org.json.JSONObject map)
static boolean	hasStageY(mmcorej.org.json.JSONObject map)
static boolean	hasStageYIntended(mmcorej.org.json.JSONObject map)
static boolean	hasStageZIntended(mmcorej.org.json.JSONObject map)
static boolean	hasWidth(mmcorej.org.json.JSONObject map)
static boolean	hasZCTOrder(mmcorej.org.json.JSONObject map)
static boolean	hasZPositionUm(mmcorej.org.json.JSONObject map)
static boolean	hasZStepUm(mmcorej.org.json.JSONObject map)
static boolean	isExploreAcq(mmcorej.org.json.JSONObject summaryMetadata_)
static boolean	isGRAY(mmcorej.org.json.JSONObject map)
static boolean	isGRAY16(mmcorej.org.json.JSONObject map)
static boolean	isGRAY8(mmcorej.org.json.JSONObject map)
static boolean	isRGB(mmcorej.org.json.JSONObject map)
static boolean	isRGB32(mmcorej.org.json.JSONObject map)
static mmcorej.org.json.JSONObject	makeSummaryMD(AcquisitionAPI acq) Make the core set of tags needed in summary metadata.
static void	setAcqDate(mmcorej.org.json.JSONObject map, String dateTime)
static void	setAffineTransformString(mmcorej.org.json.JSONObject summaryMD, String affine)
static void	setAxisPosition(mmcorej.org.json.JSONObject tags, String axis, Object position)
static void	setBitDepth(mmcorej.org.json.JSONObject map, int bitDepth)
static void	setChannelGroup(mmcorej.org.json.JSONObject summary, String channelGroup)
static void	setCoreAutofocus(mmcorej.org.json.JSONObject summary, String autoFocusDevice)
static void	setCoreCamera(mmcorej.org.json.JSONObject summary, String cameraDevice)
static void	setCoreFocus(mmcorej.org.json.JSONObject map, String zName)
static void	setCoreGalvo(mmcorej.org.json.JSONObject summary, String galvoDevice)
static void	setCoreImageProcessor(mmcorej.org.json.JSONObject summary, String imageProcessorDevice)
static void	setCoreShutter(mmcorej.org.json.JSONObject summary, String shutterDevice)
static void	setCoreSLM(mmcorej.org.json.JSONObject summary, String slmDevice)
static void	setCoreXY(mmcorej.org.json.JSONObject map, String xyName)
static void	setElapsedTimeMs(mmcorej.org.json.JSONObject map, long val)
static void	setExploreAcq(mmcorej.org.json.JSONObject summaryMetadata, boolean b)
static void	setExposure(mmcorej.org.json.JSONObject map, double exp)
static void	setHeight(mmcorej.org.json.JSONObject map, int height)
static void	setImageTime(mmcorej.org.json.JSONObject map, String time)
static void	setIntervalMs(mmcorej.org.json.JSONObject map, double val)
static void	setPixelOverlapX(mmcorej.org.json.JSONObject smd, int overlap)
static void	setPixelOverlapY(mmcorej.org.json.JSONObject smd, int overlap)
static void	setPixelSizeUm(mmcorej.org.json.JSONObject map, double val)
static void	setPixelTypeFromByteDepth(mmcorej.org.json.JSONObject map, int depth)
static void	setPixelTypeFromString(mmcorej.org.json.JSONObject map, String type)
static void	setPositionName(mmcorej.org.json.JSONObject map, String positionName)
static void	setStagePositionIntended(mmcorej.org.json.JSONObject tags, String name, Double stageSingleAxisStagePosition)
static void	setStageX(mmcorej.org.json.JSONObject smd, double x)
static void	setStageXIntended(mmcorej.org.json.JSONObject smd, double x)
static void	setStageY(mmcorej.org.json.JSONObject smd, double y)
static void	setStageYIntended(mmcorej.org.json.JSONObject smd, double y)
static void	setStageZIntended(mmcorej.org.json.JSONObject smd, double y)
static void	setWidth(mmcorej.org.json.JSONObject map, int width)
static void	setZCTOrder(mmcorej.org.json.JSONObject map, boolean val)
static void	setZPositionUm(mmcorej.org.json.JSONObject map, double val)
static void	setZStepUm(mmcorej.org.json.JSONObject map, double val)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

CHANNEL_GROUP

public static final String CHANNEL_GROUP

See Also:

Constant Field Values

CORE_AUTOFOCUS_DEVICE

public static final String CORE_AUTOFOCUS_DEVICE

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Constant Field Values

CORE_CAMERA

public static final String CORE_CAMERA

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Constant Field Values

CORE_GALVO

public static final String CORE_GALVO

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Constant Field Values

CORE_IMAGE_PROCESSOR

public static final String CORE_IMAGE_PROCESSOR

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Constant Field Values

CORE_SLM

public static final String CORE_SLM

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Constant Field Values

CORE_SHUTTER

public static final String CORE_SHUTTER

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Constant Field Values

WIDTH

public static final String WIDTH

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Constant Field Values

HEIGHT

public static final String HEIGHT

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Constant Field Values

PIX_SIZE

public static final String PIX_SIZE

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Constant Field Values

POS_NAME

public static final String POS_NAME

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Constant Field Values

X_UM_INTENDED

public static final String X_UM_INTENDED

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Constant Field Values

Y_UM_INTENDED

public static final String Y_UM_INTENDED

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Constant Field Values

Z_UM_INTENDED

public static final String Z_UM_INTENDED

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Constant Field Values

GENERIC_UM_INTENDED_SUFFIX

public static final String GENERIC_UM_INTENDED_SUFFIX

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Constant Field Values

X_UM

public static final String X_UM

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Constant Field Values

Y_UM

public static final String Y_UM

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Constant Field Values

Z_UM

public static final String Z_UM

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Constant Field Values

EXPOSURE

public static final String EXPOSURE

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Constant Field Values

CHANNEL_NAME

public static final String CHANNEL_NAME

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Constant Field Values

ZC_ORDER

public static final String ZC_ORDER

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Constant Field Values

TIME

public static final String TIME

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Constant Field Values

DATE_TIME

public static final String DATE_TIME

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Constant Field Values

SAVING_PREFIX

public static final String SAVING_PREFIX

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Constant Field Values

INITIAL_POS_LIST

public static final String INITIAL_POS_LIST

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Constant Field Values

TIMELAPSE_INTERVAL

public static final String TIMELAPSE_INTERVAL

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Constant Field Values

PIX_TYPE

public static final String PIX_TYPE

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Constant Field Values

BIT_DEPTH

public static final String BIT_DEPTH

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Constant Field Values

ELAPSED_TIME_MS

public static final String ELAPSED_TIME_MS

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Constant Field Values

Z_STEP_UM

public static final String Z_STEP_UM

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Constant Field Values

EXPLORE_ACQUISITION

public static final String EXPLORE_ACQUISITION

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Constant Field Values

AXES_GRID_COL

public static final String AXES_GRID_COL

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Constant Field Values

AXES_GRID_ROW

public static final String AXES_GRID_ROW

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Constant Field Values

OVERLAP_X

public static final String OVERLAP_X

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Constant Field Values

OVERLAP_Y

public static final String OVERLAP_Y

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Constant Field Values

AFFINE_TRANSFORM

public static final String AFFINE_TRANSFORM

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Constant Field Values

PIX_TYPE_GRAY8

public static final String PIX_TYPE_GRAY8

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Constant Field Values

PIX_TYPE_GRAY16

public static final String PIX_TYPE_GRAY16

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Constant Field Values

CORE_XYSTAGE

public static final String CORE_XYSTAGE

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Constant Field Values

CORE_FOCUS

public static final String CORE_FOCUS

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Constant Field Values

AXES

public static final String AXES

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Constant Field Values

CHANNEL_AXIS

public static final String CHANNEL_AXIS

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Constant Field Values

TIME_AXIS

public static final String TIME_AXIS

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Constant Field Values

Z_AXIS

public static final String Z_AXIS

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Constant Field Values

POSITION_AXIS

public static final String POSITION_AXIS

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Constant Field Values

TAGS

public static final String TAGS

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Constant Field Values

Constructor Detail

AcqEngMetadata

public AcqEngMetadata()

Method Detail

addImageMetadata

public static void addImageMetadata(mmcorej.org.json.JSONObject tags,
                                    AcquisitionEvent event,
                                    long elapsed_ms,
                                    double exposure)

Add the core set of image metadata that should be present in any acquisition

Parameters:

tags - image metadata

event - event

elapsed_ms - time since acq start

exposure - camera exposure in ms

makeSummaryMD

public static mmcorej.org.json.JSONObject makeSummaryMD(AcquisitionAPI acq)

Make the core set of tags needed in summary metadata. Specific types of acquistitions can add to this as needed

Parameters:

acq - acquisition

Returns:

Summary metadata

getCurrentDateAndTime

protected static String getCurrentDateAndTime()

getIndices

public static int[] getIndices(String imageLabel)

copy

public static mmcorej.org.json.JSONObject copy(mmcorej.org.json.JSONObject map)

setCoreXY

public static void setCoreXY(mmcorej.org.json.JSONObject map,
                             String xyName)

hasCoreXY

public static boolean hasCoreXY(mmcorej.org.json.JSONObject map)

getCoreXY

public static String getCoreXY(mmcorej.org.json.JSONObject map)

setCoreFocus

public static void setCoreFocus(mmcorej.org.json.JSONObject map,
                                String zName)

hasCoreFocus

public static boolean hasCoreFocus(mmcorej.org.json.JSONObject map)

getCoreFocus

public static String getCoreFocus(mmcorej.org.json.JSONObject map)

setAcqDate

public static void setAcqDate(mmcorej.org.json.JSONObject map,
                              String dateTime)

isExploreAcq

public static boolean isExploreAcq(mmcorej.org.json.JSONObject summaryMetadata_)

setExploreAcq

public static void setExploreAcq(mmcorej.org.json.JSONObject summaryMetadata,
                                 boolean b)

hasAcqDate

public boolean hasAcqDate(mmcorej.org.json.JSONObject map)

getAcqDate

public static String getAcqDate(mmcorej.org.json.JSONObject map)

setBitDepth

public static void setBitDepth(mmcorej.org.json.JSONObject map,
                               int bitDepth)

hasBitDepth

public static boolean hasBitDepth(mmcorej.org.json.JSONObject map)

getBitDepth

public static int getBitDepth(mmcorej.org.json.JSONObject map)

setWidth

public static void setWidth(mmcorej.org.json.JSONObject map,
                            int width)

hasWidth

public static boolean hasWidth(mmcorej.org.json.JSONObject map)

getWidth

public static int getWidth(mmcorej.org.json.JSONObject map)

setHeight

public static void setHeight(mmcorej.org.json.JSONObject map,
                             int height)

hasHeight

public static boolean hasHeight(mmcorej.org.json.JSONObject map)

getHeight

public static int getHeight(mmcorej.org.json.JSONObject map)

setPositionName

public static void setPositionName(mmcorej.org.json.JSONObject map,
                                   String positionName)

hasPositionName

public static boolean hasPositionName(mmcorej.org.json.JSONObject map)

getPositionName

public static String getPositionName(mmcorej.org.json.JSONObject map)

setPixelTypeFromString

public static void setPixelTypeFromString(mmcorej.org.json.JSONObject map,
                                          String type)

setPixelTypeFromByteDepth

public static void setPixelTypeFromByteDepth(mmcorej.org.json.JSONObject map,
                                             int depth)

hasPixelType

public static boolean hasPixelType(mmcorej.org.json.JSONObject map)

getPixelType

public static String getPixelType(mmcorej.org.json.JSONObject map)

getBytesPerPixel

public static int getBytesPerPixel(mmcorej.org.json.JSONObject map)

getNumberOfComponents

public static int getNumberOfComponents(mmcorej.org.json.JSONObject map)

isGRAY8

public static boolean isGRAY8(mmcorej.org.json.JSONObject map)

isGRAY16

public static boolean isGRAY16(mmcorej.org.json.JSONObject map)

isRGB32

public static boolean isRGB32(mmcorej.org.json.JSONObject map)

isGRAY

public static boolean isGRAY(mmcorej.org.json.JSONObject map)

isRGB

public static boolean isRGB(mmcorej.org.json.JSONObject map)

getKeys

public static String[] getKeys(mmcorej.org.json.JSONObject md)

getJSONArrayMember

public static mmcorej.org.json.JSONArray getJSONArrayMember(mmcorej.org.json.JSONObject obj,
                                                            String key)

setImageTime

public static void setImageTime(mmcorej.org.json.JSONObject map,
                                String time)

hasImageTime

public boolean hasImageTime(mmcorej.org.json.JSONObject map)

getImageTime

public static String getImageTime(mmcorej.org.json.JSONObject map)

getDepth

public static int getDepth(mmcorej.org.json.JSONObject tags)

setExposure

public static void setExposure(mmcorej.org.json.JSONObject map,
                               double exp)

hasExposure

public boolean hasExposure(mmcorej.org.json.JSONObject map)

getExposure

public static double getExposure(mmcorej.org.json.JSONObject map)

setPixelSizeUm

public static void setPixelSizeUm(mmcorej.org.json.JSONObject map,
                                  double val)

hasPixelSizeUm

public static boolean hasPixelSizeUm(mmcorej.org.json.JSONObject map)

getPixelSizeUm

public static double getPixelSizeUm(mmcorej.org.json.JSONObject map)

setZStepUm

public static void setZStepUm(mmcorej.org.json.JSONObject map,
                              double val)

hasZStepUm

public static boolean hasZStepUm(mmcorej.org.json.JSONObject map)

getZStepUm

public static double getZStepUm(mmcorej.org.json.JSONObject map)

setZPositionUm

public static void setZPositionUm(mmcorej.org.json.JSONObject map,
                                  double val)

hasZPositionUm

public static boolean hasZPositionUm(mmcorej.org.json.JSONObject map)

getZPositionUm

public static double getZPositionUm(mmcorej.org.json.JSONObject map)

setElapsedTimeMs

public static void setElapsedTimeMs(mmcorej.org.json.JSONObject map,
                                    long val)

hasElapsedTimeMs

public static boolean hasElapsedTimeMs(mmcorej.org.json.JSONObject map)

getElapsedTimeMs

public static long getElapsedTimeMs(mmcorej.org.json.JSONObject map)

setIntervalMs

public static void setIntervalMs(mmcorej.org.json.JSONObject map,
                                 double val)

hasIntervalMs

public static boolean hasIntervalMs(mmcorej.org.json.JSONObject map)

getIntervalMs

public static double getIntervalMs(mmcorej.org.json.JSONObject map)

setZCTOrder

public static void setZCTOrder(mmcorej.org.json.JSONObject map,
                               boolean val)

hasZCTOrder

public static boolean hasZCTOrder(mmcorej.org.json.JSONObject map)

getZCTOrder

public static boolean getZCTOrder(mmcorej.org.json.JSONObject map)

setAffineTransformString

public static void setAffineTransformString(mmcorej.org.json.JSONObject summaryMD,
                                            String affine)

hasAffineTransformString

public static boolean hasAffineTransformString(mmcorej.org.json.JSONObject map)

getAffineTransformString

public static String getAffineTransformString(mmcorej.org.json.JSONObject summaryMD)

getAffineTransform

public static AffineTransform getAffineTransform(mmcorej.org.json.JSONObject summaryMD)

setPixelOverlapX

public static void setPixelOverlapX(mmcorej.org.json.JSONObject smd,
                                    int overlap)

hasPixelOverlapX

public static boolean hasPixelOverlapX(mmcorej.org.json.JSONObject map)

getPixelOverlapX

public static int getPixelOverlapX(mmcorej.org.json.JSONObject summaryMD)

setPixelOverlapY

public static void setPixelOverlapY(mmcorej.org.json.JSONObject smd,
                                    int overlap)

hasPixelOverlapY

public static boolean hasPixelOverlapY(mmcorej.org.json.JSONObject map)

getPixelOverlapY

public static int getPixelOverlapY(mmcorej.org.json.JSONObject summaryMD)

setStageXIntended

public static void setStageXIntended(mmcorej.org.json.JSONObject smd,
                                     double x)

hasStageXIntended

public static boolean hasStageXIntended(mmcorej.org.json.JSONObject map)

getStageXIntended

public static double getStageXIntended(mmcorej.org.json.JSONObject smd)

setStageYIntended

public static void setStageYIntended(mmcorej.org.json.JSONObject smd,
                                     double y)

hasStageYIntended

public static boolean hasStageYIntended(mmcorej.org.json.JSONObject map)

getStageYIntended

public static double getStageYIntended(mmcorej.org.json.JSONObject smd)

setStageZIntended

public static void setStageZIntended(mmcorej.org.json.JSONObject smd,
                                     double y)

hasStageZIntended

public static boolean hasStageZIntended(mmcorej.org.json.JSONObject map)

getStageZIntended

public static double getStageZIntended(mmcorej.org.json.JSONObject smd)

setStagePositionIntended

public static void setStagePositionIntended(mmcorej.org.json.JSONObject tags,
                                            String name,
                                            Double stageSingleAxisStagePosition)

setStageX

public static void setStageX(mmcorej.org.json.JSONObject smd,
                             double x)

hasStageX

public static boolean hasStageX(mmcorej.org.json.JSONObject map)

getStageX

public static double getStageX(mmcorej.org.json.JSONObject smd)

setStageY

public static void setStageY(mmcorej.org.json.JSONObject smd,
                             double y)

hasStageY

public static boolean hasStageY(mmcorej.org.json.JSONObject map)

getStageY

public static double getStageY(mmcorej.org.json.JSONObject smd)

setChannelGroup

public static void setChannelGroup(mmcorej.org.json.JSONObject summary,
                                   String channelGroup)

hasChannelGroup

public static boolean hasChannelGroup(mmcorej.org.json.JSONObject map)

getChannelGroup

public static String getChannelGroup(mmcorej.org.json.JSONObject summary)

setCoreAutofocus

public static void setCoreAutofocus(mmcorej.org.json.JSONObject summary,
                                    String autoFocusDevice)

hasCoreAutofocus

public static boolean hasCoreAutofocus(mmcorej.org.json.JSONObject summary)

getCoreAutofocusDevice

public static String getCoreAutofocusDevice(mmcorej.org.json.JSONObject summary)

setCoreCamera

public static void setCoreCamera(mmcorej.org.json.JSONObject summary,
                                 String cameraDevice)

hasCoreCamera

public static boolean hasCoreCamera(mmcorej.org.json.JSONObject summary)

getCoreCamera

public static String getCoreCamera(mmcorej.org.json.JSONObject summary)

setCoreGalvo

public static void setCoreGalvo(mmcorej.org.json.JSONObject summary,
                                String galvoDevice)

hasCoreGalvo

public static boolean hasCoreGalvo(mmcorej.org.json.JSONObject summary)

getCoreGalvo

public static String getCoreGalvo(mmcorej.org.json.JSONObject summary)

setCoreImageProcessor

public static void setCoreImageProcessor(mmcorej.org.json.JSONObject summary,
                                         String imageProcessorDevice)

hasCoreImageProcessor

public static boolean hasCoreImageProcessor(mmcorej.org.json.JSONObject summary)

getCoreImageProcessor

public static String getCoreImageProcessor(mmcorej.org.json.JSONObject summary)

setCoreSLM

public static void setCoreSLM(mmcorej.org.json.JSONObject summary,
                              String slmDevice)

hasCoreSLM

public static boolean hasCoreSLM(mmcorej.org.json.JSONObject summary)

getCoreSLM

public static String getCoreSLM(mmcorej.org.json.JSONObject summary)

setCoreShutter

public static void setCoreShutter(mmcorej.org.json.JSONObject summary,
                                  String shutterDevice)

hasCoreShutter

public static boolean hasCoreShutter(mmcorej.org.json.JSONObject summary)

getCoreShutter

public static String getCoreShutter(mmcorej.org.json.JSONObject summary)

createAxes

public static void createAxes(mmcorej.org.json.JSONObject tags)

getAxes

public static HashMap<String,Object> getAxes(mmcorej.org.json.JSONObject tags)

getAxesAsJSON

public static mmcorej.org.json.JSONObject getAxesAsJSON(HashMap<String,Object> axes)

setAxisPosition

public static void setAxisPosition(mmcorej.org.json.JSONObject tags,
                                   String axis,
                                   Object position)

hasAxis

public static boolean hasAxis(mmcorej.org.json.JSONObject tags,
                              String axis)

getAxisPosition

public static Object getAxisPosition(mmcorej.org.json.JSONObject tags,
                                     String axis)