org.micromanager.acqj.util

Class AcqEventModules

java.lang.Object

org.micromanager.acqj.util.AcqEventModules

public class AcqEventModules
extends Object

A utility class with multiple "modules" functions for creating common acquisition functions that can be combined to encode complex behaviors

Author:

henrypinkard

Constructor Summary

Constructors

Constructor and Description
AcqEventModules()

Method Summary

Modifier and Type	Method and Description
static Function<AcquisitionEvent,Iterator<AcquisitionEvent>>	channels(List<ChannelSetting> channelList) Make an iterator for events for each active channel
static Function<AcquisitionEvent,Iterator<AcquisitionEvent>>	moveStage(String deviceName, int startIndex, int stopIndex, double step, double origin) Generic version of a z stack that corresponds to an arbitrary sequence of linearly spaced points along a stage
static Function<AcquisitionEvent,Iterator<AcquisitionEvent>>	positions(List<XYStagePosition> positions) Iterate over an arbitrary list of positions.
static Function<AcquisitionEvent,Iterator<AcquisitionEvent>>	timelapse(int numTimePoints, double interval_ms)
static Function<AcquisitionEvent,Iterator<AcquisitionEvent>>	zStack(int startSliceIndex, int stopSliceIndex, double zStep, double zOrigin)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AcqEventModules

public AcqEventModules()

Method Detail

zStack

public static Function<AcquisitionEvent,Iterator<AcquisitionEvent>> zStack(int startSliceIndex,
                                                                           int stopSliceIndex,
                                                                           double zStep,
                                                                           double zOrigin)

moveStage

public static Function<AcquisitionEvent,Iterator<AcquisitionEvent>> moveStage(String deviceName,
                                                                              int startIndex,
                                                                              int stopIndex,
                                                                              double step,
                                                                              double origin)

Generic version of a z stack that corresponds to an arbitrary sequence of linearly spaced points along a stage

Returns:

timelapse

public static Function<AcquisitionEvent,Iterator<AcquisitionEvent>> timelapse(int numTimePoints,
                                                                              double interval_ms)

channels

public static Function<AcquisitionEvent,Iterator<AcquisitionEvent>> channels(List<ChannelSetting> channelList)

Make an iterator for events for each active channel

Parameters:

channelList -

Returns:

positions

public static Function<AcquisitionEvent,Iterator<AcquisitionEvent>> positions(List<XYStagePosition> positions)

Iterate over an arbitrary list of positions. Adds in postition indices to the axes that assumer the order in the list provided correspond to the desired indices

Parameters:

positions -

Returns: