org.campagnelab.goby goby-framework 3.2 4.0.0 goby-io Goby I/O I/O core of the Goby Framework http://goby.campagnelab.org ${project.basedir}/protobuf ${project.build.directory}/generated-sources 1.5.0.Final 1.8 2.10 Alignments.proto Reads.proto BaseInformationRecords.proto ${basedir}/../goby-distribution/src/main/java kr.motd.maven os-maven-plugin ${os-maven-plugin.version} src/main/resources ** org.apache.maven.plugins maven-dependency-plugin ${maven-dependency-plugin.version} copy-protoc generate-sources copy com.google.protobuf protoc ${protobuf.version} ${os.detected.classifier} exe true ${project.build.directory} org.apache.maven.plugins maven-antrun-plugin ${maven-antrun-plugin.version} exec-protoc generate-sources run org.codehaus.mojo build-helper-maven-plugin ${build-helper-maven-plugin.version} add-classes generate-sources add-source ${protobuf.output.directory} org.apache.maven.plugins maven-compiler-plugin 2.1 ${java.version} ${java.version} **/*.html **/*.jsap org/campagnelab/goby/algorithmic/compression/** org/campagnelab/goby/algorithmic/dsv/** org/campagnelab/goby/algorithmic/indels/** org/campagnelab/goby/compression/** org/campagnelab/goby/reads/** org/campagnelab/goby/readers/** org/campagnelab/goby/alignments/** org/campagnelab/goby/baseinfo/** org/campagnelab/goby/counts/** org/campagnelab/goby/GobyVersion* org/campagnelab/goby/exception/** org/campagnelab/goby/modes/core/** org/campagnelab/goby/util/** org/campagnelab/goby/parsers/** org/campagnelab/goby/predictions/** org/campagnelab/dl/varanalysis/protobuf/** org.apache.maven.plugins maven-source-plugin 3.0.1 org/campagnelab/goby/algorithmic/compression/** org/campagnelab/goby/algorithmic/dsv/** org/campagnelab/goby/algorithmic/indels/** org/campagnelab/goby/compression/** org/campagnelab/goby/reads/** org/campagnelab/goby/readers/** org/campagnelab/goby/alignments/** org/campagnelab/goby/baseinfo/** org/campagnelab/goby/counts/** org/campagnelab/goby/GobyVersion* org/campagnelab/goby/exception/** org/campagnelab/goby/modes/core/** org/campagnelab/goby/util/** org/campagnelab/goby/parsers/** org/campagnelab/goby/predictions/** org/campagnelab/dl/varanalysis/protobuf/** attach-sources package jar org.apache.maven.plugins maven-javadoc-plugin 2.10.4 org/campagnelab/goby/algorithmic/compression/** org/campagnelab/goby/algorithmic/dsv/** org/campagnelab/goby/algorithmic/indels/** org/campagnelab/goby/compression/** org/campagnelab/goby/reads/** org/campagnelab/goby/readers/** org/campagnelab/goby/alignments/** org/campagnelab/goby/baseinfo/** org/campagnelab/goby/counts/** org/campagnelab/goby/GobyVersion* org/campagnelab/goby/exception/** org/campagnelab/goby/modes/core/** org/campagnelab/goby/util/** org/campagnelab/goby/parsers/** org/campagnelab/goby/predictions/** org/campagnelab/dl/varanalysis/protobuf/** attach-javadocs package jar -Xdoclint:none com.google.protobuf protobuf-java ${protobuf.version} it.unimi.dsi fastutil 7.0.12 org.campagnelab.icb icb-utils 2.0.1 org.slf4j slf4j-api 1.7.21 it.unimi.dsi dsiutils 2.3.3 com.google.guava * com.github.samtools htsjdk 2.8.1 com.google.protobuf protobuf-java ${protobuf.version} org.apache.commons commons-math 2.2 org.reflections reflections 0.9.10 org.slf4j * com.github.lucarosellini.rJava JRI 0.9-7