4.0.0 org.broadinstitute gatk-test-utils 4.1.2.0 GATK4 Test Utilities Development on GATK 4 http://github.com/broadinstitute/gatk BSD 3-Clause https://github.com/broadinstitute/gatk/blob/master/LICENSE.TXT repo gatkdev GATK Development Team gatk-dev-public@broadinstitute.org scm:git@github.com:broadinstitute/gatk.git scm:git@github.com:broadinstitute/gatk.git scm:git@github.com:broadinstitute/gatk.git org.broadinstitute barclay 2.1.0 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.aeonbits.owner owner 1.0.9 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * com.github.broadinstitute picard 2.19.0 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.genomicsdb genomicsdb 1.0.1 compile javax.servlet * junit junit protobuf-java * slf4j-jdk14 org.slf4j spark-sql_2.11 * spark-core_2.11 * jul-to-slf4j * htsjdk * guava-jdk5 com.google.guava * com.esotericsoftware.kryo log4j * servlet-api * com.opencsv opencsv 3.4 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * com.google.guava guava 18.0 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * com.github.samtools htsjdk 2.19.0 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * com.google.cloud google-cloud-nio 0.81.0-alpha shaded compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * gov.nist.math.jama gov.nist.math.jama 1.1.1 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * com.google.cloud.bigdataoss gcs-connector 1.6.3-hadoop2 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.apache.logging.log4j log4j-api 2.3 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.apache.logging.log4j log4j-core 2.3 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.apache.logging.log4j log4j-jcl 2.3 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.apache.commons commons-lang3 3.5 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.apache.commons commons-math3 3.5 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.apache.commons commons-collections4 4.1 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.apache.commons commons-vfs2 2.0 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * commons-io commons-io 2.5 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.reflections reflections 0.9.10 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * it.unimi.dsi fastutil 7.0.6 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.broadinstitute hdf5-java-bindings 1.1.0-hdf5_2.11.0 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.broadinstitute gatk-native-bindings 1.0.0 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.ojalgo ojalgo 44.0.0 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.ojalgo ojalgo-commons-math3 1.0.0 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo * org.apache.commons servlet-api * org.apache.spark spark-mllib_2.11 2.2.0 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.bdgenomics.bdg-formats bdg-formats 0.5.0 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.bdgenomics.adam adam-core-spark2_2.11 0.20.0 compile * org.slf4j * org.scala-lang hadoop-bam * javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * * org.apache.hadoop guava-jdk5 com.google.guava * com.esotericsoftware.kryo kryo * servlet-api * org.jgrapht jgrapht-core 0.9.1 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.disq-bio disq 0.3.0 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.apache.hadoop hadoop-client 2.8.2 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * com.github.jsr203hadoop jsr203hadoop 1.0.3 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * de.javakaffee kryo-serializers 0.41 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo kryo * servlet-api * com.github.fommil.netlib netlib-native_ref-osx-x86_64 1.1 natives compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * com.github.fommil.netlib netlib-native_ref-linux-x86_64 1.1 natives compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * com.github.fommil.netlib netlib-native_system-linux-x86_64 1.1 natives compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * com.github.fommil.netlib netlib-native_system-osx-x86_64 1.1 natives compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * com.esotericsoftware kryo 3.0.3 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j asm org.ow2.asm jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo reflectasm com.esotericsoftware servlet-api * com.esotericsoftware reflectasm 1.10.0 shaded compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * com.intel.gkl gkl 0.8.6 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * htsjdk * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.broadinstitute gatk-bwamem-jni 1.0.4 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.broadinstitute gatk-fermilite-jni 1.2.0 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.xerial sqlite-jdbc 3.20.1 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * biz.k11i xgboost-predictor 0.3.0 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.objenesis objenesis 2.1 compile javax.servlet * junit junit slf4j-jdk14 org.slf4j jul-to-slf4j * guava-jdk5 com.google.guava * com.esotericsoftware.kryo servlet-api * org.mockito mockito-core 2.10.0 test junit junit slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava com.google.jimfs jimfs 1.1 test junit junit slf4j-jdk14 org.slf4j guava-jdk5 com.google.guava