org.forester.ws.wabi

Class TxSearch

java.lang.Object

org.forester.ws.wabi.TxSearch

public final class TxSearch
extends Object

This is to access the Web API for Biology (WABI) at DDBJ. See: http://xml.nig.ac.jp/ Service Description: TXSearch is a retrieval system for a Taxonomy Database which was unified by DDBJ, GenBank and EMBL, which is developed by DDBJ. See: http://xml.nig.ac.jp/wabi/Method?serviceName=TxSearch&mode=methodList

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	TxSearch.RANKS
static class	TxSearch.TAX_NAME_CLASS
static class	TxSearch.TAX_RANK

Constructor Summary

Constructors

Constructor and Description
TxSearch()

Method Summary

Modifier and Type	Method and Description
static String[]	getLineage(String result)
static String	getTaxonomicRank(String result)
static String	getTxId(String tx_name)
static String	getTxName(String tx_id)
static void	main(String[] args)
static String	searchLineage(List<String> queries, List<TxSearch.RANKS> ranks)
static String	searchLineage(List<String> queries, List<TxSearch.RANKS> ranks, String superkingdom)
static String	searchParam(String tx_name, TxSearch.TAX_NAME_CLASS tx_name_class, TxSearch.TAX_RANK tx_rank, int tx_rmax, boolean as_scientific_name)
static String	searchSimple(String tx_name)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TxSearch

public TxSearch()

Method Detail

getLineage

public static String[] getLineage(String result)
                           throws IOException

Throws:

IOException

getTaxonomicRank

public static String getTaxonomicRank(String result)
                               throws IOException

Throws:

IOException

getTxId

public static String getTxId(String tx_name)
                      throws IOException

Throws:

IOException

getTxName

public static String getTxName(String tx_id)
                        throws IOException

Throws:

IOException

main

public static void main(String[] args)
                 throws IOException

Throws:

IOException

searchLineage

public static String searchLineage(List<String> queries,
                                   List<TxSearch.RANKS> ranks)
                            throws IOException

Throws:

IOException

searchLineage

public static String searchLineage(List<String> queries,
                                   List<TxSearch.RANKS> ranks,
                                   String superkingdom)
                            throws IOException

Throws:

IOException

searchParam

public static String searchParam(String tx_name,
                                 TxSearch.TAX_NAME_CLASS tx_name_class,
                                 TxSearch.TAX_RANK tx_rank,
                                 int tx_rmax,
                                 boolean as_scientific_name)
                          throws IOException

Throws:

IOException

searchSimple

public static String searchSimple(String tx_name)
                           throws IOException

Throws:

IOException