Uses of Class
org.forester.ws.seqdb.UniProtTaxonomy

Packages that use UniProtTaxonomy

Package	Description
org.forester.analysis
org.forester.ws.seqdb

Uses of UniProtTaxonomy in org.forester.analysis

Methods in org.forester.analysis that return UniProtTaxonomy

Modifier and Type	Method and Description
static UniProtTaxonomy	TaxonomyDataManager.obtainUniProtTaxonomy(String simple_name, org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt)
static UniProtTaxonomy	TaxonomyDataManager.obtainUniProtTaxonomy(Taxonomy tax, Object query, org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt)

Uses of UniProtTaxonomy in org.forester.ws.seqdb

Methods in org.forester.ws.seqdb that return UniProtTaxonomy

Modifier and Type	Method and Description
UniProtTaxonomy	UniProtTaxonomy.copy() Creates deep copy for all fields, except lineage.
static UniProtTaxonomy	UniProtTaxonomy.createSpecialFromScientificName(String sn)

Methods in org.forester.ws.seqdb that return types with arguments of type UniProtTaxonomy

Modifier and Type	Method and Description
static List<UniProtTaxonomy>	SequenceDbWsTools.getTaxonomiesFromCommonNameStrict(String cn, int max_taxonomies_return)
static List<UniProtTaxonomy>	SequenceDbWsTools.getTaxonomiesFromId(String id, int max_taxonomies_return)
static List<UniProtTaxonomy>	SequenceDbWsTools.getTaxonomiesFromScientificNameStrict(String sn, int max_taxonomies_return) Does not return "sub-types".
static List<UniProtTaxonomy>	SequenceDbWsTools.getTaxonomiesFromTaxonomyCode(String code, int max_taxonomies_return)