org.forester.ws.seqdb

Class UniProtTaxonomy

java.lang.Object

org.forester.ws.seqdb.UniProtTaxonomy

public final class UniProtTaxonomy
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
static String	ARCHAEA
static String	BACTERIA
static String	CELLULAR_ORGANISMS
static String	EUKARYOTA
static String	VIRUSES
static String	X

Constructor Summary

Constructors

Constructor and Description
UniProtTaxonomy(List<String> lineage, String code, String common_name, String scientific_name, String synonym, String rank, String id)
UniProtTaxonomy(String line)

Method Summary

Modifier and Type	Method and Description
UniProtTaxonomy	copy() Creates deep copy for all fields, except lineage.
static UniProtTaxonomy	createSpecialFromScientificName(String sn)
String	getCode()
String	getCommonName()
String	getId()
List<String>	getLineage()
String	getRank()
String	getScientificName()
String	getSynonym()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ARCHAEA

public static final String ARCHAEA

See Also:

Constant Field Values

BACTERIA

public static final String BACTERIA

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Constant Field Values

EUKARYOTA

public static final String EUKARYOTA

See Also:

Constant Field Values

CELLULAR_ORGANISMS

public static final String CELLULAR_ORGANISMS

See Also:

Constant Field Values

VIRUSES

public static final String VIRUSES

See Also:

Constant Field Values

X

public static final String X

See Also:

Constant Field Values

Constructor Detail

UniProtTaxonomy

public UniProtTaxonomy(String line)

UniProtTaxonomy

public UniProtTaxonomy(List<String> lineage,
                       String code,
                       String common_name,
                       String scientific_name,
                       String synonym,
                       String rank,
                       String id)

Method Detail

copy

public UniProtTaxonomy copy()

Creates deep copy for all fields, except lineage.

Returns:

getCode

public String getCode()

getCommonName

public String getCommonName()

getId

public String getId()

getLineage

public List<String> getLineage()

getRank

public String getRank()

getScientificName

public String getScientificName()

getSynonym

public String getSynonym()

createSpecialFromScientificName

public static final UniProtTaxonomy createSpecialFromScientificName(String sn)