org.forester.ws.seqdb

Class EbiDbEntry

java.lang.Object

org.forester.ws.seqdb.EbiDbEntry

All Implemented Interfaces:

SequenceDatabaseEntry

public final class EbiDbEntry
extends Object
implements SequenceDatabaseEntry

Method Summary

Modifier and Type	Method and Description
Object	clone()
static SequenceDatabaseEntry	createInstanceFromPlainTextForRefSeq(List<String> lines)
String	getAccession()
SortedSet<Annotation>	getAnnotations()
String	getChromosome()
SortedSet<Accession>	getCrossReferences()
String	getGeneName()
SortedSet<GoTerm>	getGoTerms()
String	getMap()
MolecularSequence	getMolecularSequence()
String	getProvider()
String	getSequenceName()
String	getSequenceSymbol()
String	getTaxonomyIdentifier()
String	getTaxonomyScientificName()
boolean	isEmpty()
void	setProvider(String provider)

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

clone

public Object clone()
             throws CloneNotSupportedException

Overrides:

clone in class Object

Throws:

CloneNotSupportedException

getAccession

public String getAccession()

Specified by:

getAccession in interface SequenceDatabaseEntry

getAnnotations

public SortedSet<Annotation> getAnnotations()

Specified by:

getAnnotations in interface SequenceDatabaseEntry

getChromosome

public String getChromosome()

Specified by:

getChromosome in interface SequenceDatabaseEntry

getCrossReferences

public SortedSet<Accession> getCrossReferences()

Specified by:

getCrossReferences in interface SequenceDatabaseEntry

getGeneName

public String getGeneName()

Specified by:

getGeneName in interface SequenceDatabaseEntry

getGoTerms

public SortedSet<GoTerm> getGoTerms()

Specified by:

getGoTerms in interface SequenceDatabaseEntry

getMap

public String getMap()

Specified by:

getMap in interface SequenceDatabaseEntry

getProvider

public String getProvider()

Specified by:

getProvider in interface SequenceDatabaseEntry

getSequenceName

public String getSequenceName()

Specified by:

getSequenceName in interface SequenceDatabaseEntry

getSequenceSymbol

public String getSequenceSymbol()

Specified by:

getSequenceSymbol in interface SequenceDatabaseEntry

getTaxonomyIdentifier

public String getTaxonomyIdentifier()

Specified by:

getTaxonomyIdentifier in interface SequenceDatabaseEntry

getTaxonomyScientificName

public String getTaxonomyScientificName()

Specified by:

getTaxonomyScientificName in interface SequenceDatabaseEntry

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface SequenceDatabaseEntry

setProvider

public void setProvider(String provider)

createInstanceFromPlainTextForRefSeq

public static SequenceDatabaseEntry createInstanceFromPlainTextForRefSeq(List<String> lines)

getMolecularSequence

public MolecularSequence getMolecularSequence()

Specified by:

getMolecularSequence in interface SequenceDatabaseEntry