GenomeWideCombinableDomains (Forester 1.038 API)

Nested Classes
Modifier and Type	Interface and Description
`static class`	`GenomeWideCombinableDomains.GenomeWideCombinableDomainsSortOrder`

All Methods Instance Methods Abstract Methods
Modifier and Type	Method and Description
`boolean`	`contains(String key_id)`
`CombinableDomains`	`get(String key_id)`
`SortedMap<String,CombinableDomains>`	`getAllCombinableDomainsIds()`
`SortedSet<String>`	`getAllDomainIds()` This should return all domains ids present in the genome.
`BinaryDomainCombination.DomainCombinationType`	`getDomainCombinationType()`
`SortedSet<String>`	`getMostPromiscuosDomain()`
`DescriptiveStatistics`	`getPerGenomeDomainPromiscuityStatistics()` This should return a statistic for per domain promiscuity in a genome.
`int`	`getSize()`
`Species`	`getSpecies()`
`SortedSet<BinaryDomainCombination>`	`toBinaryDomainCombinations()` This should return all binary domain combinations present in the genome.
`StringBuilder`	`toStringBuilder(GenomeWideCombinableDomains.GenomeWideCombinableDomainsSortOrder order)`

SortedMap<String,CombinableDomains> getAllCombinableDomainsIds()

BinaryDomainCombination.DomainCombinationType getDomainCombinationType()

StringBuilder toStringBuilder(GenomeWideCombinableDomains.GenomeWideCombinableDomainsSortOrder order)

SortedSet<String> getMostPromiscuosDomain()

Interface GenomeWideCombinableDomains