org.forester.surfacing

Interface DomainSimilarityCalculator

All Known Implementing Classes:

BasicDomainSimilarityCalculator

public interface DomainSimilarityCalculator

Nested Class Summary

Nested Classes

Modifier and Type	Interface and Description
static class	DomainSimilarityCalculator.Detailedness
static class	DomainSimilarityCalculator.GoAnnotationOutput

Method Summary

Modifier and Type	Method and Description
SortedSet<DomainSimilarity>	calculateSimilarities(PairwiseDomainSimilarityCalculator pairwise_calculator, List<GenomeWideCombinableDomains> cdc_list, boolean ignore_domains_without_combinations_in_any_genome, boolean ignore_domains_specific_to_one_genome)

Method Detail

calculateSimilarities

SortedSet<DomainSimilarity> calculateSimilarities(PairwiseDomainSimilarityCalculator pairwise_calculator,
                                                  List<GenomeWideCombinableDomains> cdc_list,
                                                  boolean ignore_domains_without_combinations_in_any_genome,
                                                  boolean ignore_domains_specific_to_one_genome)