org.forester.surfacing

Class DomainLengths

java.lang.Object

org.forester.surfacing.DomainLengths

public class DomainLengths
extends Object

Constructor Summary

Constructors

Constructor and Description
DomainLengths(String domain_id)

Method Summary

Modifier and Type	Method and Description
void	addLength(Species species, int domain_length)
DescriptiveStatistics	calculateMeanBasedStatistics() Returns descriptive statistics based on the arithmetic means for each species.
double	calculateZScoreForSpecies(Species species) Note.
String	getDomainId()
DescriptiveStatistics	getLengthStatistic(Species species)
List<DescriptiveStatistics>	getLengthStatisticsList()
List<Species>	getMeanBasedOutlierSpecies(double z_score_limit)
List<Species>	getSpeciesList()
boolean	isHasLengthStatistic(Species species)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DomainLengths

public DomainLengths(String domain_id)

Method Detail

addLength

public void addLength(Species species,
                      int domain_length)

calculateMeanBasedStatistics

public DescriptiveStatistics calculateMeanBasedStatistics()

Returns descriptive statistics based on the arithmetic means for each species.

Returns:

calculateZScoreForSpecies

public double calculateZScoreForSpecies(Species species)

Note. This is not technically a Z-score since the distribution of means is unknown (and not normal).

Parameters:

species -

Returns:

getDomainId

public String getDomainId()

getLengthStatistic

public DescriptiveStatistics getLengthStatistic(Species species)

getLengthStatisticsList

public List<DescriptiveStatistics> getLengthStatisticsList()

getMeanBasedOutlierSpecies

public List<Species> getMeanBasedOutlierSpecies(double z_score_limit)

getSpeciesList

public List<Species> getSpeciesList()

isHasLengthStatistic

public boolean isHasLengthStatistic(Species species)