Uses of Class
org.forester.sdi.SDIutil.ALGORITHM

Packages that use SDIutil.ALGORITHM

Package	Description
org.forester.rio
org.forester.sdi

Uses of SDIutil.ALGORITHM in org.forester.rio

Methods in org.forester.rio with parameters of type SDIutil.ALGORITHM

Modifier and Type	Method and Description
static RIO	RIO.executeAnalysis(File gene_trees_file, File species_tree_file, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, int first, int last, boolean produce_log, boolean verbose, boolean transfer_taxonomy)
static RIO	RIO.executeAnalysis(File gene_trees_file, Phylogeny species_tree, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, boolean produce_log, boolean verbose, boolean transfer_taxonomy)
static RIO	RIO.executeAnalysis(File gene_trees_file, Phylogeny species_tree, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, int first, int last, boolean produce_log, boolean verbose, boolean transfer_taxonomy)
static RIO	RIO.executeAnalysis(IteratingPhylogenyParser p, File species_tree_file, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, int first, int last, boolean produce_log, boolean verbose, boolean transfer_taxonomy)
static RIO	RIO.executeAnalysis(IteratingPhylogenyParser p, Phylogeny species_tree, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, boolean produce_log, boolean verbose, boolean transfer_taxonomy)
static RIO	RIO.executeAnalysis(IteratingPhylogenyParser p, Phylogeny species_tree, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, int first, int last, boolean produce_log, boolean verbose, boolean transfer_taxonomy)
static RIO	RIO.executeAnalysis(Phylogeny[] gene_trees, Phylogeny species_tree, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, boolean produce_log, boolean verbose, boolean transfer_taxonomy)
static RIO	RIO.executeAnalysis(Phylogeny[] gene_trees, Phylogeny species_tree, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, int first, int last, boolean produce_log, boolean verbose, boolean transfer_taxonomy)

Uses of SDIutil.ALGORITHM in org.forester.sdi

Methods in org.forester.sdi that return SDIutil.ALGORITHM

Modifier and Type	Method and Description
static SDIutil.ALGORITHM	SDIutil.ALGORITHM.valueOf(String name) Returns the enum constant of this type with the specified name.
static SDIutil.ALGORITHM[]	SDIutil.ALGORITHM.values() Returns an array containing the constants of this enum type, in the order they are declared.