org.forester.protein

Class BasicDomain

java.lang.Object

org.forester.protein.BasicDomain

All Implemented Interfaces:

Comparable<Domain>, Domain

public class BasicDomain
extends Object
implements Domain

Constructor Summary

Constructors

Constructor and Description
BasicDomain(String id)
BasicDomain(String id, int from, int to, short number, short total_count, double per_domain_evalue, double per_domain_score)

Method Summary

Modifier and Type	Method and Description
int	compareTo(Domain domain) Basic domains are compared/sorted based upon their identifiers (case insensitive) and their numbers.
boolean	equals(Object o) Basic domains are considered equal if they have the same identifier (case sensitive).
String	getDomainId()
int	getFrom()
int	getLength()
short	getNumber()
double	getPerDomainEvalue()
double	getPerDomainScore()
int	getTo()
short	getTotalCount()
int	hashCode()
static short	obtainIdAsShort(String id)
static String	obtainIdFromShort(short id)
String	toString()
StringBuffer	toStringBuffer()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

BasicDomain

public BasicDomain(String id)

BasicDomain

public BasicDomain(String id,
                   int from,
                   int to,
                   short number,
                   short total_count,
                   double per_domain_evalue,
                   double per_domain_score)

Method Detail

compareTo

public int compareTo(Domain domain)

Basic domains are compared/sorted based upon their identifiers (case insensitive) and their numbers.

Specified by:

compareTo in interface Comparable<Domain>

equals

public boolean equals(Object o)

Basic domains are considered equal if they have the same identifier (case sensitive).

Overrides:

equals in class Object

getDomainId

public String getDomainId()

Specified by:

getDomainId in interface Domain

getFrom

public int getFrom()

Specified by:

getFrom in interface Domain

getLength

public int getLength()

Specified by:

getLength in interface Domain

getNumber

public short getNumber()

Specified by:

getNumber in interface Domain

getPerDomainEvalue

public double getPerDomainEvalue()

Specified by:

getPerDomainEvalue in interface Domain

getPerDomainScore

public double getPerDomainScore()

Specified by:

getPerDomainScore in interface Domain

getTo

public int getTo()

Specified by:

getTo in interface Domain

getTotalCount

public short getTotalCount()

Specified by:

getTotalCount in interface Domain

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object

toStringBuffer

public StringBuffer toStringBuffer()

obtainIdAsShort

public static final short obtainIdAsShort(String id)

obtainIdFromShort

public static final String obtainIdFromShort(short id)