org.forester.phylogeny.factories

Class ParserBasedPhylogenyFactory

java.lang.Object

org.forester.phylogeny.factories.ParserBasedPhylogenyFactory

All Implemented Interfaces:

PhylogenyFactory

public class ParserBasedPhylogenyFactory
extends Object
implements PhylogenyFactory

Method Summary

Modifier and Type	Method and Description
Object	clone()
Phylogeny[]	create(Object source, Object parser) This must create a Phylogeny from source (e.g.
Phylogeny[]	create(Object source, Object parser, String schema_location)
static PhylogenyFactory	getInstance()

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

clone

public Object clone()
             throws CloneNotSupportedException

Overrides:

clone in class Object

Throws:

CloneNotSupportedException

create

public Phylogeny[] create(Object source,
                          Object parser)
                   throws IOException

Description copied from interface: PhylogenyFactory

This must create a Phylogeny from source (e.g. an XML file, an alignment, pairwise distances) by using creator (e.g. an XML file parser, an algorithm implementation).

Specified by:

create in interface PhylogenyFactory

Parameters:

source - a source to create a Phylogeny from

parser - a means to create a Phylogeny

Returns:

a Phylogeny[] based on argument source

Throws:

IOException

create

public Phylogeny[] create(Object source,
                          Object parser,
                          String schema_location)
                   throws IOException

Throws:

IOException

getInstance

public static PhylogenyFactory getInstance()