org.forester.phylogeny.data

Class NodeVisualData

java.lang.Object

org.forester.phylogeny.data.NodeVisualData

All Implemented Interfaces:

PhylogenyData

public final class NodeVisualData
extends Object
implements PhylogenyData

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	NodeVisualData.FontType
static class	NodeVisualData.NodeFill
static class	NodeVisualData.NodeShape

Field Summary

Fields

Modifier and Type	Field and Description
static String	APTX_VISUALIZATION_REF
static int	DEFAULT_SIZE
static String	FONT_COLOR_REF
static String	FONT_COLOR_TYPE
static String	FONT_REF
static String	FONT_SIZE_REF
static String	FONT_SIZE_TYPE
static String	FONT_STYLE_BOLD
static String	FONT_STYLE_BOLD_ITALIC
static String	FONT_STYLE_ITALIC
static String	FONT_STYLE_PLAIN
static String	FONT_STYLE_REF
static String	FONT_STYLE_TYPE
static String	FONT_TYPE
static String	NODE_COLOR_REF
static String	NODE_COLOR_TYPE
static String	NODE_FILL_GRADIENT
static String	NODE_FILL_NONE
static String	NODE_FILL_SOLID
static String	NODE_FILL_TYPE_REF
static String	NODE_FILL_TYPE_TYPE
static String	NODE_SHAPE_CIRCLE
static String	NODE_SHAPE_RECTANGLE
static String	NODE_SHAPE_REF
static String	NODE_SHAPE_TYPE
static String	NODE_SIZE_REF
static String	NODE_SIZE_TYPE
static String	NODE_TRANSPARENCY_REF
static String	NODE_TRANSPARENCY_TYPE

Constructor Summary

Constructors

Constructor and Description
NodeVisualData()
NodeVisualData(String font_name, NodeVisualData.FontType font_style, byte font_size, Color font_color, NodeVisualData.NodeShape shape, NodeVisualData.NodeFill fill_type, Color node_color, float size, float transparency)

Method Summary

Modifier and Type	Method and Description
StringBuffer	asSimpleText()
StringBuffer	asText()
PhylogenyData	copy() Creates a new PhylogenyData object with identical values as this PhylogenyData.
NodeVisualData.NodeFill	getFillType()
Font	getFont()
Color	getFontColor()
String	getFontName()
byte	getFontSize()
NodeVisualData.FontType	getFontStyle()
int	getFontStyleInt()
Color	getNodeColor()
NodeVisualData.NodeShape	getShape()
float	getSize()
float	getTransparency()
boolean	isEmpty()
boolean	isEqual(PhylogenyData data) Compares this PhylogenyData to PhylogenyData data.
void	parseProperty(Property prop)
void	setFillType(NodeVisualData.NodeFill fill_type)
void	setFillType(String fill)
void	setFontColor(Color font_color)
void	setFontName(String font_name)
void	setFontSize(int font_size)
void	setFontStyle(int font_style)
void	setFontStyle(NodeVisualData.FontType font_style)
void	setFontStyle(String font_style)
void	setNodeColor(Color node_color)
void	setShape(NodeVisualData.NodeShape shape)
void	setShape(String shape)
void	setSize(float size)
void	setTransparency(float transparency)
StringBuffer	toNHX()
void	toPhyloXML(Writer writer, int level, String indentation) Writes a phyloXML representation of this phylogeny data.
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

APTX_VISUALIZATION_REF

public static final String APTX_VISUALIZATION_REF

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Constant Field Values

DEFAULT_SIZE

public static final int DEFAULT_SIZE

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Constant Field Values

FONT_COLOR_REF

public static final String FONT_COLOR_REF

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Constant Field Values

FONT_COLOR_TYPE

public static final String FONT_COLOR_TYPE

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Constant Field Values

FONT_REF

public static final String FONT_REF

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Constant Field Values

FONT_SIZE_REF

public static final String FONT_SIZE_REF

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Constant Field Values

FONT_SIZE_TYPE

public static final String FONT_SIZE_TYPE

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Constant Field Values

FONT_STYLE_BOLD

public static final String FONT_STYLE_BOLD

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Constant Field Values

FONT_STYLE_BOLD_ITALIC

public static final String FONT_STYLE_BOLD_ITALIC

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Constant Field Values

FONT_STYLE_ITALIC

public static final String FONT_STYLE_ITALIC

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Constant Field Values

FONT_STYLE_PLAIN

public static final String FONT_STYLE_PLAIN

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Constant Field Values

FONT_STYLE_REF

public static final String FONT_STYLE_REF

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Constant Field Values

FONT_STYLE_TYPE

public static final String FONT_STYLE_TYPE

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Constant Field Values

FONT_TYPE

public static final String FONT_TYPE

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Constant Field Values

NODE_COLOR_REF

public static final String NODE_COLOR_REF

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Constant Field Values

NODE_COLOR_TYPE

public static final String NODE_COLOR_TYPE

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Constant Field Values

NODE_FILL_GRADIENT

public static final String NODE_FILL_GRADIENT

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Constant Field Values

NODE_FILL_NONE

public static final String NODE_FILL_NONE

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Constant Field Values

NODE_FILL_SOLID

public static final String NODE_FILL_SOLID

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Constant Field Values

NODE_FILL_TYPE_REF

public static final String NODE_FILL_TYPE_REF

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Constant Field Values

NODE_FILL_TYPE_TYPE

public static final String NODE_FILL_TYPE_TYPE

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Constant Field Values

NODE_SHAPE_CIRCLE

public static final String NODE_SHAPE_CIRCLE

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Constant Field Values

NODE_SHAPE_RECTANGLE

public static final String NODE_SHAPE_RECTANGLE

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Constant Field Values

NODE_SHAPE_REF

public static final String NODE_SHAPE_REF

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Constant Field Values

NODE_SHAPE_TYPE

public static final String NODE_SHAPE_TYPE

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Constant Field Values

NODE_SIZE_REF

public static final String NODE_SIZE_REF

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Constant Field Values

NODE_SIZE_TYPE

public static final String NODE_SIZE_TYPE

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Constant Field Values

NODE_TRANSPARENCY_REF

public static final String NODE_TRANSPARENCY_REF

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Constant Field Values

NODE_TRANSPARENCY_TYPE

public static final String NODE_TRANSPARENCY_TYPE

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Constant Field Values

Constructor Detail

NodeVisualData

public NodeVisualData()

NodeVisualData

public NodeVisualData(String font_name,
                      NodeVisualData.FontType font_style,
                      byte font_size,
                      Color font_color,
                      NodeVisualData.NodeShape shape,
                      NodeVisualData.NodeFill fill_type,
                      Color node_color,
                      float size,
                      float transparency)

Method Detail

asSimpleText

public final StringBuffer asSimpleText()

Specified by:

asSimpleText in interface PhylogenyData

asText

public final StringBuffer asText()

Specified by:

asText in interface PhylogenyData

copy

public final PhylogenyData copy()

Description copied from interface: PhylogenyData

Creates a new PhylogenyData object with identical values as this PhylogenyData. This ~should~ return a deep copy, but not there yet.

Specified by:

copy in interface PhylogenyData

Returns:

a ~deep~ copy of this PhylogenyData

getFillType

public final NodeVisualData.NodeFill getFillType()

getFont

public final Font getFont()

getFontColor

public final Color getFontColor()

getFontName

public final String getFontName()

getFontSize

public final byte getFontSize()

getFontStyle

public final NodeVisualData.FontType getFontStyle()

getFontStyleInt

public final int getFontStyleInt()

getNodeColor

public final Color getNodeColor()

getShape

public final NodeVisualData.NodeShape getShape()

getSize

public final float getSize()

getTransparency

public final float getTransparency()

isEmpty

public final boolean isEmpty()

isEqual

public final boolean isEqual(PhylogenyData data)

Description copied from interface: PhylogenyData

Compares this PhylogenyData to PhylogenyData data. In general, this should return true if and only if all fiels are exactly identical.

Specified by:

isEqual in interface PhylogenyData

Returns:

in general, true if and only if all fiels are exactly identical, false otherwise

parseProperty

public void parseProperty(Property prop)

setFillType

public final void setFillType(NodeVisualData.NodeFill fill_type)

setFillType

public final void setFillType(String fill)

setFontColor

public final void setFontColor(Color font_color)

setFontName

public final void setFontName(String font_name)

setFontSize

public final void setFontSize(int font_size)

setFontStyle

public final void setFontStyle(NodeVisualData.FontType font_style)

setFontStyle

public final void setFontStyle(int font_style)

setFontStyle

public final void setFontStyle(String font_style)

setNodeColor

public final void setNodeColor(Color node_color)

setShape

public final void setShape(NodeVisualData.NodeShape shape)

setShape

public final void setShape(String shape)

setSize

public final void setSize(float size)

setTransparency

public final void setTransparency(float transparency)

toNHX

public final StringBuffer toNHX()

Specified by:

toNHX in interface PhylogenyData

toPhyloXML

public final void toPhyloXML(Writer writer,
                             int level,
                             String indentation)
                      throws IOException

Description copied from interface: PhylogenyData

Writes a phyloXML representation of this phylogeny data.

Specified by:

toPhyloXML in interface PhylogenyData

Throws:

IOException

toString

public final String toString()

Overrides:

toString in class Object