org.forester.phylogeny

Class PhylogenyBranch

java.lang.Object

org.forester.phylogeny.PhylogenyBranch

public class PhylogenyBranch
extends Object

Constructor Summary

Constructors

Constructor and Description
PhylogenyBranch(PhylogenyNode first_node, PhylogenyNode second_node)
PhylogenyBranch(PhylogenyNode first_node, PhylogenyNode second_node, boolean direction_towards_first)

Method Summary

Modifier and Type	Method and Description
boolean	equals(Object obj)
PhylogenyNode	getConnectedNode(PhylogenyNode node)
PhylogenyData	getData()
PhylogenyNode	getFirstNode()
PhylogenyNode	getSecondNode()
int	hashCode()
boolean	isDirected()
boolean	isDirectionTowards(PhylogenyNode node)
void	setDirectionTowards(PhylogenyNode node)
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

PhylogenyBranch

public PhylogenyBranch(PhylogenyNode first_node,
                       PhylogenyNode second_node)

PhylogenyBranch

public PhylogenyBranch(PhylogenyNode first_node,
                       PhylogenyNode second_node,
                       boolean direction_towards_first)

Method Detail

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

getConnectedNode

public PhylogenyNode getConnectedNode(PhylogenyNode node)
                               throws IllegalArgumentException

Throws:

IllegalArgumentException

getData

public PhylogenyData getData()

getFirstNode

public PhylogenyNode getFirstNode()

getSecondNode

public PhylogenyNode getSecondNode()

hashCode

public int hashCode()

Overrides:

hashCode in class Object

isDirected

public boolean isDirected()

isDirectionTowards

public boolean isDirectionTowards(PhylogenyNode node)
                           throws RuntimeException

Throws:

RuntimeException

setDirectionTowards

public void setDirectionTowards(PhylogenyNode node)

toString

public String toString()

Overrides:

toString in class Object