Uses of Class
org.forester.msa_compactor.MsaProperties

Packages that use MsaProperties

Package	Description
org.forester.msa_compactor

Uses of MsaProperties in org.forester.msa_compactor

Methods in org.forester.msa_compactor that return types with arguments of type MsaProperties

Modifier and Type	Method and Description
List<MsaProperties>	MsaCompactor.chart(int step, boolean realign, boolean normalize_for_effective_seq_length)
List<MsaProperties>	MsaCompactor.removeViaGapAverage(double mean_gapiness)
List<MsaProperties>	MsaCompactor.removeViaLength(int length)
List<MsaProperties>	MsaCompactor.removeWorstOffenders(int to_remove)

Method parameters in org.forester.msa_compactor with type arguments of type MsaProperties

Modifier and Type	Method and Description
static void	Chart.display(List<MsaProperties> msa_props, int initial_number_of_seqs, boolean show_msa_qual, String title)