org.forester.msa_compactor

Class MsaProperties

java.lang.Object

org.forester.msa_compactor.MsaProperties

public final class MsaProperties
extends Object

Constructor Summary

Constructors

Constructor and Description
MsaProperties(int number_of_sequences, int length, double gap_ratio, double entropy7, double entropy21, double avg_number_of_gaps, String removed_seq)
MsaProperties(Msa msa, String removed_seq, boolean calculate_normalized_shannon_entropy)

Method Summary

Modifier and Type	Method and Description
double	getAvgNumberOfGaps()
double	getEntropy21()
double	getEntropy7()
double	getGapRatio()
int	getLength()
int	getNumberOfSequences()
String	getRemovedSeq()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MsaProperties

public MsaProperties(int number_of_sequences,
                     int length,
                     double gap_ratio,
                     double entropy7,
                     double entropy21,
                     double avg_number_of_gaps,
                     String removed_seq)

MsaProperties

public MsaProperties(Msa msa,
                     String removed_seq,
                     boolean calculate_normalized_shannon_entropy)

Method Detail

getEntropy21

public final double getEntropy21()

getEntropy7

public final double getEntropy7()

getGapRatio

public final double getGapRatio()

getAvgNumberOfGaps

public final double getAvgNumberOfGaps()

getLength

public final int getLength()

getNumberOfSequences

public final int getNumberOfSequences()

getRemovedSeq

public final String getRemovedSeq()