org.forester.io.writers

Class SequenceWriter

java.lang.Object

org.forester.io.writers.SequenceWriter

public class SequenceWriter
extends Object

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	SequenceWriter.SEQ_FORMAT

Constructor Summary

Constructors

Constructor and Description
SequenceWriter()

Method Summary

Modifier and Type	Method and Description
static StringBuilder	toFasta(MolecularSequence seq, int width)
static void	toFasta(MolecularSequence seq, Writer w, int width)
static StringBuilder	toFasta(String name, String mol_seq, int width)
static void	writeSeqs(List<MolecularSequence> seqs, File file, SequenceWriter.SEQ_FORMAT format, int width)
static void	writeSeqs(List<MolecularSequence> seqs, Writer writer, SequenceWriter.SEQ_FORMAT format, int width)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SequenceWriter

public SequenceWriter()

Method Detail

toFasta

public static StringBuilder toFasta(MolecularSequence seq,
                                    int width)

toFasta

public static StringBuilder toFasta(String name,
                                    String mol_seq,
                                    int width)

toFasta

public static void toFasta(MolecularSequence seq,
                           Writer w,
                           int width)
                    throws IOException

Throws:

IOException

writeSeqs

public static void writeSeqs(List<MolecularSequence> seqs,
                             File file,
                             SequenceWriter.SEQ_FORMAT format,
                             int width)
                      throws IOException

Throws:

IOException

writeSeqs

public static void writeSeqs(List<MolecularSequence> seqs,
                             Writer writer,
                             SequenceWriter.SEQ_FORMAT format,
                             int width)
                      throws IOException

Throws:

IOException