org.forester.io.parsers.phyloxml

Class PhyloXmlUtil

java.lang.Object

org.forester.io.parsers.phyloxml.PhyloXmlUtil

public final class PhyloXmlUtil
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
static Pattern	LIT_REF_DOI_PATTERN
static String	OTHER
static int	ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT
static String	SEQ_TYPE_DNA
static String	SEQ_TYPE_PROTEIN
static String	SEQ_TYPE_RNA
static Pattern	SEQUENCE_SYMBOL_PATTERN
static Set<String>	SEQUENCE_TYPES
static Pattern	TAXOMONY_CODE_PATTERN
static List<String>	TAXONOMY_RANKS_LIST
static Set<String>	TAXONOMY_RANKS_SET
static String	UNIPROT_TAX_PROVIDER
static String	UNKNOWN
static String	VECTOR_PROPERTY_REF
static String	VECTOR_PROPERTY_TYPE

Constructor Summary

Constructors

Constructor and Description
PhyloXmlUtil()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

OTHER

public static final String OTHER

See Also:

Constant Field Values

UNKNOWN

public static final String UNKNOWN

See Also:

Constant Field Values

SEQUENCE_SYMBOL_PATTERN

public static final Pattern SEQUENCE_SYMBOL_PATTERN

TAXOMONY_CODE_PATTERN

public static final Pattern TAXOMONY_CODE_PATTERN

LIT_REF_DOI_PATTERN

public static final Pattern LIT_REF_DOI_PATTERN

SEQUENCE_TYPES

public static final Set<String> SEQUENCE_TYPES

TAXONOMY_RANKS_LIST

public static final List<String> TAXONOMY_RANKS_LIST

TAXONOMY_RANKS_SET

public static final Set<String> TAXONOMY_RANKS_SET

ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT

public static final int ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT

See Also:

Constant Field Values

VECTOR_PROPERTY_REF

public static final String VECTOR_PROPERTY_REF

See Also:

Constant Field Values

VECTOR_PROPERTY_TYPE

public static final String VECTOR_PROPERTY_TYPE

See Also:

Constant Field Values

UNIPROT_TAX_PROVIDER

public static final String UNIPROT_TAX_PROVIDER

See Also:

Constant Field Values

SEQ_TYPE_RNA

public static final String SEQ_TYPE_RNA

See Also:

Constant Field Values

SEQ_TYPE_DNA

public static final String SEQ_TYPE_DNA

See Also:

Constant Field Values

SEQ_TYPE_PROTEIN

public static final String SEQ_TYPE_PROTEIN

See Also:

Constant Field Values

Constructor Detail

PhyloXmlUtil

public PhyloXmlUtil()