org.forester.io.parsers.phyloxml

Class PhyloXmlParser

java.lang.Object

org.forester.io.parsers.phyloxml.PhyloXmlParser

All Implemented Interfaces:

PhylogenyParser

public class PhyloXmlParser
extends Object
implements PhylogenyParser

Field Summary

Fields

Modifier and Type	Field and Description
static String	APACHE_FEATURES_VALIDATION_SCHEMA
static String	APACHE_FEATURES_VALIDATION_SCHEMA_FULL
static String	APACHE_PROPERTIES_SCHEMA_EXTERNAL_LOCATION
static String	JAXP_SCHEMA_LANGUAGE
static String	JAXP_SCHEMA_SOURCE
static String	SAX_FEATURES_VALIDATION
static String	W3C_XML_SCHEMA

Method Summary

Modifier and Type	Method and Description
static PhyloXmlParser	createPhyloXmlParser()
static PhyloXmlParser	createPhyloXmlParserXsdValidating()
int	getErrorCount()
StringBuffer	getErrorMessages()
String	getName()
int	getWarningCount()
StringBuffer	getWarningMessages()
boolean	isValid()
Phylogeny[]	parse()
void	setSource(Object source)
void	setValidateAgainstSchema(String schema_location)
void	setZippedInputstream(boolean zipped_inputstream)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

JAXP_SCHEMA_LANGUAGE

public static final String JAXP_SCHEMA_LANGUAGE

See Also:

Constant Field Values

W3C_XML_SCHEMA

public static final String W3C_XML_SCHEMA

See Also:

Constant Field Values

JAXP_SCHEMA_SOURCE

public static final String JAXP_SCHEMA_SOURCE

See Also:

Constant Field Values

SAX_FEATURES_VALIDATION

public static final String SAX_FEATURES_VALIDATION

See Also:

Constant Field Values

APACHE_FEATURES_VALIDATION_SCHEMA

public static final String APACHE_FEATURES_VALIDATION_SCHEMA

See Also:

Constant Field Values

APACHE_FEATURES_VALIDATION_SCHEMA_FULL

public static final String APACHE_FEATURES_VALIDATION_SCHEMA_FULL

See Also:

Constant Field Values

APACHE_PROPERTIES_SCHEMA_EXTERNAL_LOCATION

public static final String APACHE_PROPERTIES_SCHEMA_EXTERNAL_LOCATION

See Also:

Constant Field Values

Method Detail

getErrorCount

public int getErrorCount()

getErrorMessages

public StringBuffer getErrorMessages()

getWarningCount

public int getWarningCount()

getWarningMessages

public StringBuffer getWarningMessages()

isValid

public boolean isValid()

parse

public Phylogeny[] parse()
                  throws IOException,
                         PhylogenyParserException

Specified by:

parse in interface PhylogenyParser

Throws:

IOException

PhylogenyParserException

setSource

public void setSource(Object source)

Specified by:

setSource in interface PhylogenyParser

setValidateAgainstSchema

public void setValidateAgainstSchema(String schema_location)

setZippedInputstream

public void setZippedInputstream(boolean zipped_inputstream)

createPhyloXmlParserXsdValidating

public static PhyloXmlParser createPhyloXmlParserXsdValidating()

createPhyloXmlParser

public static PhyloXmlParser createPhyloXmlParser()

getName

public String getName()

Specified by:

getName in interface PhylogenyParser