org.forester.io.parsers.phyloxml

Class PhyloXmlMapping

java.lang.Object

org.forester.io.parsers.phyloxml.PhyloXmlMapping

public final class PhyloXmlMapping
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
static String	ACCESSION
static String	ACCESSION_COMMENT_ATTR
static String	ACCESSION_SOURCE_ATTR
static String	ANNOTATION
static String	ANNOTATION_DESC
static String	ANNOTATION_EVIDENCE_ATTR
static String	ANNOTATION_REF_ATTR
static String	ANNOTATION_SOURCE_ATTR
static String	ANNOTATION_TYPE_ATTR
static String	BINARY_CHARACTER
static String	BINARY_CHARACTERS
static String	BINARY_CHARACTERS_GAINED
static String	BINARY_CHARACTERS_GAINED_COUNT_ATTR
static String	BINARY_CHARACTERS_LOST
static String	BINARY_CHARACTERS_LOST_COUNT_ATTR
static String	BINARY_CHARACTERS_PRESENT
static String	BINARY_CHARACTERS_PRESENT_COUNT_ATTR
static String	BINARY_CHARACTERS_TYPE_ATTR
static String	BRANCH_LENGTH
static String	CLADE
static String	CLADE_DATE
static String	CLADE_DATE_DESC
static String	CLADE_DATE_MAX
static String	CLADE_DATE_MIN
static String	CLADE_DATE_UNIT
static String	CLADE_DATE_VALUE
static String	COLOR
static String	COLOR_BLUE
static String	COLOR_GREEN
static String	COLOR_RED
static String	CONFIDENCE
static String	CONFIDENCE_SD_ATTR
static String	CONFIDENCE_TYPE_ATTR
static String	DISTRIBUTION
static String	DISTRIBUTION_DESC
static String	EVENT_DUPLICATIONS
static String	EVENT_LOSSES
static String	EVENT_SPECIATIONS
static String	EVENT_TYPE
static String	EVENTS
static String	ID_REF
static String	IDENTIFIER
static String	IDENTIFIER_PROVIDER_ATTR
static String	NODE_COLLAPSE
static String	NODE_NAME
static String	PHYLOGENY
static String	PHYLOGENY_BRANCHLENGTH_UNIT_ATTR
static String	PHYLOGENY_DESCRIPTION
static String	PHYLOGENY_IS_REROOTABLE_ATTR
static String	PHYLOGENY_IS_ROOTED_ATTR
static String	PHYLOGENY_NAME
static String	PHYLOGENY_TYPE_ATTR
static String	POINT
static String	POINT_ALTITUDE
static String	POINT_ALTITUDE_UNIT_ATTR
static String	POINT_GEODETIC_DATUM
static String	POINT_LATITUDE
static String	POINT_LONGITUDE
static String	POLYGON
static String	PROPERTY
static String	PROPERTY_APPLIES_TO
static String	PROPERTY_DATATYPE
static String	PROPERTY_REF
static String	PROPERTY_UNIT
static String	REFERENCE
static String	REFERENCE_DESC
static String	REFERENCE_DOI_ATTR
static String	SEQUENCE
static String	SEQUENCE_DOMAIN_ARCHITECTURE_DOMAIN
static String	SEQUENCE_DOMAIN_ARCHITECTURE_LENGTH
static String	SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_CONFIDENCE
static String	SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_FROM
static String	SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_TO
static String	SEQUENCE_DOMAIN_ARCHITECURE
static String	SEQUENCE_GENE_NAME
static String	SEQUENCE_LOCATION
static String	SEQUENCE_MOL_SEQ
static String	SEQUENCE_MOL_SEQ_ALIGNED_ATTR
static String	SEQUENCE_NAME
static String	SEQUENCE_RELATION
static String	SEQUENCE_RELATION_DISTANCE
static String	SEQUENCE_RELATION_ID_REF0
static String	SEQUENCE_RELATION_ID_REF1
static String	SEQUENCE_RELATION_TYPE
static String	SEQUENCE_SOURCE_ID
static String	SEQUENCE_SYMBOL
static String	SEQUENCE_TYPE
static String	SEQUENCE_X_REFS
static String	TAXONOMY
static String	TAXONOMY_AUTHORITY
static String	TAXONOMY_CODE
static String	TAXONOMY_COMMON_NAME
static String	TAXONOMY_RANK
static String	TAXONOMY_SCIENTIFIC_NAME
static String	TAXONOMY_SYNONYM
static String	TYPE_ATTR
static String	URI
static String	URI_DESC_ATTR
static String	WIDTH

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ACCESSION

public static final String ACCESSION

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Constant Field Values

ACCESSION_COMMENT_ATTR

public static final String ACCESSION_COMMENT_ATTR

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Constant Field Values

ACCESSION_SOURCE_ATTR

public static final String ACCESSION_SOURCE_ATTR

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ANNOTATION

public static final String ANNOTATION

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ANNOTATION_DESC

public static final String ANNOTATION_DESC

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ANNOTATION_EVIDENCE_ATTR

public static final String ANNOTATION_EVIDENCE_ATTR

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ANNOTATION_REF_ATTR

public static final String ANNOTATION_REF_ATTR

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ANNOTATION_SOURCE_ATTR

public static final String ANNOTATION_SOURCE_ATTR

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ANNOTATION_TYPE_ATTR

public static final String ANNOTATION_TYPE_ATTR

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BINARY_CHARACTER

public static final String BINARY_CHARACTER

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BINARY_CHARACTERS

public static final String BINARY_CHARACTERS

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BINARY_CHARACTERS_GAINED

public static final String BINARY_CHARACTERS_GAINED

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BINARY_CHARACTERS_GAINED_COUNT_ATTR

public static final String BINARY_CHARACTERS_GAINED_COUNT_ATTR

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BINARY_CHARACTERS_LOST

public static final String BINARY_CHARACTERS_LOST

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BINARY_CHARACTERS_LOST_COUNT_ATTR

public static final String BINARY_CHARACTERS_LOST_COUNT_ATTR

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BINARY_CHARACTERS_PRESENT

public static final String BINARY_CHARACTERS_PRESENT

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BINARY_CHARACTERS_PRESENT_COUNT_ATTR

public static final String BINARY_CHARACTERS_PRESENT_COUNT_ATTR

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BINARY_CHARACTERS_TYPE_ATTR

public static final String BINARY_CHARACTERS_TYPE_ATTR

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BRANCH_LENGTH

public static final String BRANCH_LENGTH

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CLADE

public static final String CLADE

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CLADE_DATE

public static final String CLADE_DATE

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CLADE_DATE_DESC

public static final String CLADE_DATE_DESC

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CLADE_DATE_MAX

public static final String CLADE_DATE_MAX

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CLADE_DATE_MIN

public static final String CLADE_DATE_MIN

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CLADE_DATE_UNIT

public static final String CLADE_DATE_UNIT

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CLADE_DATE_VALUE

public static final String CLADE_DATE_VALUE

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COLOR

public static final String COLOR

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COLOR_BLUE

public static final String COLOR_BLUE

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COLOR_GREEN

public static final String COLOR_GREEN

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COLOR_RED

public static final String COLOR_RED

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CONFIDENCE

public static final String CONFIDENCE

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CONFIDENCE_SD_ATTR

public static final String CONFIDENCE_SD_ATTR

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CONFIDENCE_TYPE_ATTR

public static final String CONFIDENCE_TYPE_ATTR

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DISTRIBUTION

public static final String DISTRIBUTION

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DISTRIBUTION_DESC

public static final String DISTRIBUTION_DESC

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EVENT_DUPLICATIONS

public static final String EVENT_DUPLICATIONS

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EVENT_LOSSES

public static final String EVENT_LOSSES

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EVENT_SPECIATIONS

public static final String EVENT_SPECIATIONS

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EVENT_TYPE

public static final String EVENT_TYPE

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EVENTS

public static final String EVENTS

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ID_REF

public static final String ID_REF

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IDENTIFIER

public static final String IDENTIFIER

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IDENTIFIER_PROVIDER_ATTR

public static final String IDENTIFIER_PROVIDER_ATTR

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NODE_COLLAPSE

public static final String NODE_COLLAPSE

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NODE_NAME

public static final String NODE_NAME

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PHYLOGENY

public static final String PHYLOGENY

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PHYLOGENY_BRANCHLENGTH_UNIT_ATTR

public static final String PHYLOGENY_BRANCHLENGTH_UNIT_ATTR

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PHYLOGENY_DESCRIPTION

public static final String PHYLOGENY_DESCRIPTION

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PHYLOGENY_IS_REROOTABLE_ATTR

public static final String PHYLOGENY_IS_REROOTABLE_ATTR

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PHYLOGENY_IS_ROOTED_ATTR

public static final String PHYLOGENY_IS_ROOTED_ATTR

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PHYLOGENY_NAME

public static final String PHYLOGENY_NAME

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PHYLOGENY_TYPE_ATTR

public static final String PHYLOGENY_TYPE_ATTR

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POINT

public static final String POINT

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POINT_ALTITUDE

public static final String POINT_ALTITUDE

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POINT_ALTITUDE_UNIT_ATTR

public static final String POINT_ALTITUDE_UNIT_ATTR

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POINT_GEODETIC_DATUM

public static final String POINT_GEODETIC_DATUM

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POINT_LATITUDE

public static final String POINT_LATITUDE

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POINT_LONGITUDE

public static final String POINT_LONGITUDE

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POLYGON

public static final String POLYGON

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PROPERTY

public static final String PROPERTY

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PROPERTY_APPLIES_TO

public static final String PROPERTY_APPLIES_TO

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PROPERTY_DATATYPE

public static final String PROPERTY_DATATYPE

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PROPERTY_REF

public static final String PROPERTY_REF

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PROPERTY_UNIT

public static final String PROPERTY_UNIT

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REFERENCE

public static final String REFERENCE

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REFERENCE_DESC

public static final String REFERENCE_DESC

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REFERENCE_DOI_ATTR

public static final String REFERENCE_DOI_ATTR

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SEQUENCE

public static final String SEQUENCE

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SEQUENCE_DOMAIN_ARCHITECTURE_DOMAIN

public static final String SEQUENCE_DOMAIN_ARCHITECTURE_DOMAIN

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SEQUENCE_DOMAIN_ARCHITECTURE_LENGTH

public static final String SEQUENCE_DOMAIN_ARCHITECTURE_LENGTH

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SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_CONFIDENCE

public static final String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_CONFIDENCE

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SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_FROM

public static final String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_FROM

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SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_TO

public static final String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_TO

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SEQUENCE_DOMAIN_ARCHITECURE

public static final String SEQUENCE_DOMAIN_ARCHITECURE

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SEQUENCE_GENE_NAME

public static final String SEQUENCE_GENE_NAME

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SEQUENCE_LOCATION

public static final String SEQUENCE_LOCATION

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SEQUENCE_MOL_SEQ

public static final String SEQUENCE_MOL_SEQ

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SEQUENCE_MOL_SEQ_ALIGNED_ATTR

public static final String SEQUENCE_MOL_SEQ_ALIGNED_ATTR

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SEQUENCE_NAME

public static final String SEQUENCE_NAME

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SEQUENCE_RELATION

public static final String SEQUENCE_RELATION

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SEQUENCE_RELATION_DISTANCE

public static final String SEQUENCE_RELATION_DISTANCE

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SEQUENCE_RELATION_ID_REF0

public static final String SEQUENCE_RELATION_ID_REF0

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SEQUENCE_RELATION_ID_REF1

public static final String SEQUENCE_RELATION_ID_REF1

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SEQUENCE_RELATION_TYPE

public static final String SEQUENCE_RELATION_TYPE

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SEQUENCE_SOURCE_ID

public static final String SEQUENCE_SOURCE_ID

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SEQUENCE_SYMBOL

public static final String SEQUENCE_SYMBOL

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SEQUENCE_TYPE

public static final String SEQUENCE_TYPE

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SEQUENCE_X_REFS

public static final String SEQUENCE_X_REFS

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TAXONOMY

public static final String TAXONOMY

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TAXONOMY_AUTHORITY

public static final String TAXONOMY_AUTHORITY

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TAXONOMY_CODE

public static final String TAXONOMY_CODE

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TAXONOMY_COMMON_NAME

public static final String TAXONOMY_COMMON_NAME

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TAXONOMY_RANK

public static final String TAXONOMY_RANK

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TAXONOMY_SCIENTIFIC_NAME

public static final String TAXONOMY_SCIENTIFIC_NAME

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TAXONOMY_SYNONYM

public static final String TAXONOMY_SYNONYM

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TYPE_ATTR

public static final String TYPE_ATTR

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URI

public static final String URI

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URI_DESC_ATTR

public static final String URI_DESC_ATTR

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WIDTH

public static final String WIDTH

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