Uses of Interface
org.forester.io.parsers.IteratingPhylogenyParser

Packages that use IteratingPhylogenyParser

Package	Description
org.forester.io.parsers.nexus
org.forester.io.parsers.nhx
org.forester.rio

Uses of IteratingPhylogenyParser in org.forester.io.parsers.nexus

Classes in org.forester.io.parsers.nexus that implement IteratingPhylogenyParser

Modifier and Type	Class and Description
class	NexusPhylogeniesParser

Uses of IteratingPhylogenyParser in org.forester.io.parsers.nhx

Classes in org.forester.io.parsers.nhx that implement IteratingPhylogenyParser

Modifier and Type	Class and Description
class	NHXParser

Uses of IteratingPhylogenyParser in org.forester.rio

Methods in org.forester.rio with parameters of type IteratingPhylogenyParser

Modifier and Type	Method and Description
static RIO	RIO.executeAnalysis(IteratingPhylogenyParser p, File species_tree_file, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, int first, int last, boolean produce_log, boolean verbose, boolean transfer_taxonomy)
static RIO	RIO.executeAnalysis(IteratingPhylogenyParser p, Phylogeny species_tree, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, boolean produce_log, boolean verbose, boolean transfer_taxonomy)
static RIO	RIO.executeAnalysis(IteratingPhylogenyParser p, Phylogeny species_tree, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, int first, int last, boolean produce_log, boolean verbose, boolean transfer_taxonomy)