Uses of Interface
org.forester.evoinference.matrix.distance.DistanceMatrix

Packages that use DistanceMatrix

Package	Description
org.forester.evoinference.matrix.distance
org.forester.io.parsers
org.forester.surfacing

Uses of DistanceMatrix in org.forester.evoinference.matrix.distance

Classes in org.forester.evoinference.matrix.distance that implement DistanceMatrix

Modifier and Type	Class and Description
class	BasicSymmetricalDistanceMatrix

Uses of DistanceMatrix in org.forester.io.parsers

Methods in org.forester.io.parsers that return DistanceMatrix

Modifier and Type	Method and Description
DistanceMatrix[]	SymmetricalDistanceMatrixParser.parse(Object source)

Uses of DistanceMatrix in org.forester.surfacing

Methods in org.forester.surfacing that return types with arguments of type DistanceMatrix

Modifier and Type	Method and Description
List<DistanceMatrix>	PairwiseGenomeComparator.getDomainDistanceScoresMeans()
List<DistanceMatrix>	PairwiseGenomeComparator.getSharedBinaryCombinationsBasedDistances()
List<DistanceMatrix>	PairwiseGenomeComparator.getSharedDomainsBasedDistances()

Methods in org.forester.surfacing with parameters of type DistanceMatrix

Modifier and Type	Method and Description
static Phylogeny	SurfacingUtil.createNjTreeBasedOnMatrixToFile(File nj_tree_outfile, DistanceMatrix distance)

Method parameters in org.forester.surfacing with type arguments of type DistanceMatrix

Modifier and Type	Method and Description
static void	SurfacingUtil.writeMatrixToFile(File matrix_outfile, List<DistanceMatrix> matrices)