org.forester.evoinference.matrix.distance

Class BasicSymmetricalDistanceMatrix

java.lang.Object

org.forester.evoinference.matrix.distance.BasicSymmetricalDistanceMatrix

All Implemented Interfaces:

DistanceMatrix

public final class BasicSymmetricalDistanceMatrix
extends Object
implements DistanceMatrix

Nested Class Summary

Nested classes/interfaces inherited from interface org.forester.evoinference.matrix.distance.DistanceMatrix

DistanceMatrix.Format

Constructor Summary

Constructors

Constructor and Description
BasicSymmetricalDistanceMatrix(int size)

Method Summary

Modifier and Type	Method and Description
String	getIdentifier(int i)
int	getIndex(String identifier)
int	getSize()
double	getValue(int col, int row)
double[][]	getValues()
void	randomize(long seed)
void	setIdentifier(int i, String identifier)
void	setRow(String s, int row)
void	setValue(int col, int row, double d)
String	toString()
StringBuffer	toStringBuffer(DistanceMatrix.Format format)
void	write(Writer w)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

BasicSymmetricalDistanceMatrix

public BasicSymmetricalDistanceMatrix(int size)

Method Detail

getIdentifier

public final String getIdentifier(int i)

Specified by:

getIdentifier in interface DistanceMatrix

getIndex

public final int getIndex(String identifier)

Specified by:

getIndex in interface DistanceMatrix

getSize

public final int getSize()

Specified by:

getSize in interface DistanceMatrix

getValue

public final double getValue(int col,
                             int row)

Specified by:

getValue in interface DistanceMatrix

getValues

public final double[][] getValues()

randomize

public final void randomize(long seed)

setIdentifier

public final void setIdentifier(int i,
                                String identifier)

Specified by:

setIdentifier in interface DistanceMatrix

setRow

public final void setRow(String s,
                         int row)

setValue

public final void setValue(int col,
                           int row,
                           double d)

Specified by:

setValue in interface DistanceMatrix

toString

public final String toString()

Overrides:

toString in class Object

toStringBuffer

public final StringBuffer toStringBuffer(DistanceMatrix.Format format)

Specified by:

toStringBuffer in interface DistanceMatrix

write

public final void write(Writer w)
                 throws IOException

Throws:

IOException