org.forester.archaeopteryx.tools

Class PhylogeneticInferrer

java.lang.Object

org.forester.archaeopteryx.tools.RunnableProcess

org.forester.archaeopteryx.tools.PhylogeneticInferrer

All Implemented Interfaces:

Runnable

public class PhylogeneticInferrer
extends RunnableProcess

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	PhylogeneticInferrer.MSA_PRG

Field Summary

Fields

Modifier and Type	Field and Description
static String	MSA_FILE_SUFFIX
static String	PWD_FILE_SUFFIX

Constructor Summary

Constructors

Constructor and Description
PhylogeneticInferrer(List<MolecularSequence> seqs, PhylogeneticInferenceOptions options, MainFrameApplication mf)
PhylogeneticInferrer(Msa msa, PhylogeneticInferenceOptions options, MainFrameApplication mf)

Method Summary

Modifier and Type	Method and Description
void	run()

Methods inherited from class org.forester.archaeopteryx.tools.RunnableProcess

end, start

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

MSA_FILE_SUFFIX

public static final String MSA_FILE_SUFFIX

See Also:

Constant Field Values

PWD_FILE_SUFFIX

public static final String PWD_FILE_SUFFIX

See Also:

Constant Field Values

Constructor Detail

PhylogeneticInferrer

public PhylogeneticInferrer(List<MolecularSequence> seqs,
                            PhylogeneticInferenceOptions options,
                            MainFrameApplication mf)

PhylogeneticInferrer

public PhylogeneticInferrer(Msa msa,
                            PhylogeneticInferenceOptions options,
                            MainFrameApplication mf)

Method Detail

run

public void run()