org.forester.archaeopteryx

Class TreePanelUtil

java.lang.Object

org.forester.archaeopteryx.TreePanelUtil

public class TreePanelUtil
extends Object

Constructor Summary

Constructors

Constructor and Description
TreePanelUtil()

Method Summary

Modifier and Type	Method and Description
static String	createUriForSeqWeb(PhylogenyNode node, Configuration conf, TreePanel tp)
static List<String>	createUrisForPdbWeb(PhylogenyNode node, List<Accession> pdb_accs, Configuration configuration, TreePanel treePanel)
static Set<Taxonomy>	obtainDistinctTaxonomies(PhylogenyNode node) Returns the set of distinct taxonomies of all external nodes of node.
static void	showExtDescNodeDataUserSelectedHelper(org.forester.archaeopteryx.ControlPanel cp, PhylogenyNode node, List<String> data)
static void	showExtDescNodeDataUserSelectedHelperHelper(String s, StringBuilder sb)
static void	showInformationMessage(Component parent, String title, String msg)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TreePanelUtil

public TreePanelUtil()

Method Detail

createUriForSeqWeb

public static final String createUriForSeqWeb(PhylogenyNode node,
                                              Configuration conf,
                                              TreePanel tp)

createUrisForPdbWeb

public static List<String> createUrisForPdbWeb(PhylogenyNode node,
                                               List<Accession> pdb_accs,
                                               Configuration configuration,
                                               TreePanel treePanel)

obtainDistinctTaxonomies

public static Set<Taxonomy> obtainDistinctTaxonomies(PhylogenyNode node)

Returns the set of distinct taxonomies of all external nodes of node. If at least one the external nodes has no taxonomy, null is returned.

showExtDescNodeDataUserSelectedHelper

public static final void showExtDescNodeDataUserSelectedHelper(org.forester.archaeopteryx.ControlPanel cp,
                                                               PhylogenyNode node,
                                                               List<String> data)

showExtDescNodeDataUserSelectedHelperHelper

public static final void showExtDescNodeDataUserSelectedHelperHelper(String s,
                                                                     StringBuilder sb)

showInformationMessage

public static final void showInformationMessage(Component parent,
                                                String title,
                                                String msg)