4.0.0 org.bdgenomics.avocado avocado-parent_2.10 0.1.0 ../pom.xml avocado-cli_2.10 0.1.0 jar avocado-cli: Command line interface for a distributed variant caller org.apache.maven.plugins maven-shade-plugin false *:* META-INF/*.SF META-INF/*.DSA META-INF/*.RSA package shade org.codehaus.mojo templating-maven-plugin filter-src filter-sources pl.project13.maven git-commit-id-plugin revision net.alchim31.maven scala-maven-plugin scala-compile-first process-resources compile scala-test-compile-first process-test-resources testCompile attach-scaladocs verify doc-jar ${scala.version} true -unchecked -optimise -deprecation -Xms64m -Xms1024m -Xmx1024m -source ${java.version} -target ${java.version} org.apache.maven.plugins maven-surefire-plugin true org.scalatest scalatest-maven-plugin ${project.build.directory}/surefire-reports . AvocadoTestSuite.txt -Xmx1024m test test org.bdgenomics.utils utils-cli-spark2_2.10 org.bdgenomics.avocado avocado-core_2.10 test-jar test org.bdgenomics.utils utils-misc-spark2_2.10 test-jar test org.bdgenomics.avocado avocado-core_2.10 org.apache.hadoop hadoop-client javax.servlet * commons-io commons-io org.bdgenomics.adam adam-core-spark2_2.10 org.bdgenomics.adam adam-cli-spark2_2.10 org.apache.spark spark-core_${scala.version.prefix} org.apache.spark spark-sql_${scala.version.prefix} org.scalatest scalatest_${scala.version.prefix} test