<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
		 xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<artifactId>eqtl-functional-enrichment</artifactId>
	<version>0.0.2</version>
	<name>eqtl-functional-enrichment</name>
	<packaging>jar</packaging>
	<parent>
		<groupId>nl.systemsgenetics</groupId>
		<artifactId>systemsgenetics</artifactId>
		<version>1.0.1</version>
	</parent>
	<dependencies>
		<dependency>
			<groupId>nl.systemsgenetics</groupId>
			<artifactId>Genotype-IO</artifactId>
			<version>1.0.1</version>
		</dependency> 		
		<dependency>
			<groupId>${project.groupId}</groupId>
			<artifactId>genetica-libraries</artifactId>
			<version>1.0.2</version>
		</dependency>
		<dependency>
			<groupId>commons-cli</groupId>
			<artifactId>commons-cli</artifactId>
			<version>1.2</version>
		</dependency>
		<dependency>
			<groupId>log4j</groupId>
			<artifactId>log4j</artifactId>
			<version>1.2.17</version>
		</dependency>
		<dependency>
			<groupId>org.testng</groupId>
			<artifactId>testng</artifactId>
			<version>6.5.2</version>
			<scope>test</scope>
		</dependency>
	</dependencies>

	<properties>
		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
	</properties>

	<build>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-compiler-plugin</artifactId>
				<version>2.3.2</version>
				<configuration>
					<encoding>UTF-8</encoding>
				</configuration>
			</plugin>
			<plugin>
				<artifactId>maven-assembly-plugin</artifactId>
				<configuration>
					<descriptorRefs>
						<descriptorRef>jar-with-dependencies</descriptorRef>
					</descriptorRefs>
					<archive>
						<manifest>
							<mainClass>nl.systemsgenetics.eqtlpermutationtranscriptionfactoranalysis.EQtlPermutationTranscriptionFactorAnalysis</mainClass>
							<addDefaultImplementationEntries>true</addDefaultImplementationEntries>
							<addDefaultSpecificationEntries>true</addDefaultSpecificationEntries>
						</manifest>
					</archive>
				</configuration>
				<executions>
					<execution>
						<phase>package</phase>
						<goals>
							<goal>single</goal>
						</goals>
					</execution>
				</executions>
			</plugin>
		</plugins>

	</build>
	<profiles>
		<profile>
			<id>netbeans-private-testng</id>
			<activation>
				<property>
					<name>netbeans.testng.action</name>
				</property>
			</activation>
			<build>
				<plugins>
					<plugin>
						<groupId>org.apache.maven.plugins</groupId>
						<artifactId>maven-surefire-plugin</artifactId>
						<version>2.11</version>
						<configuration>
							<suiteXmlFiles>
								<suiteXmlFile>target/nb-private/testng-suite.xml</suiteXmlFile>
							</suiteXmlFiles>
						</configuration>
					</plugin>
				</plugins>
			</build>
		</profile>
	</profiles>
</project>