<?xml version="1.0"?>
<project xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd" xmlns="http://maven.apache.org/POM/4.0.0"
		 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
	<modelVersion>4.0.0</modelVersion>
	<parent>
		<groupId>nl.systemsgenetics</groupId>
		<artifactId>systemsgenetics</artifactId>
		<version>1.0.2</version>
	</parent>
	<artifactId>eQTLInteractionAnalyser</artifactId>
	<version>1.1</version>
	<name>eQTLInteractionAnalyser</name>
	<url>http://maven.apache.org</url>
	<properties>
		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
	</properties>
	<dependencies>
		<dependency>
			<groupId>net.sf.jsci</groupId>
			<artifactId>jsci</artifactId>
			<version>1.2</version>
		</dependency>
		<dependency>
			<groupId>org.apache.commons</groupId>
			<artifactId>commons-math3</artifactId>
			<version>3.2</version>
		</dependency>
		<dependency>
			<groupId>net.sourceforge.parallelcolt</groupId>
			<artifactId>parallelcolt</artifactId>
			<version>0.10.0</version>
		</dependency>
		<dependency>
			<groupId>gov.nist.math.jama</groupId>
			<artifactId>gov.nist.math.jama</artifactId>
			<version>1.1.1</version>
		</dependency>
		<dependency>
			<groupId>junit</groupId>
			<artifactId>junit</artifactId>
			<version>3.8.1</version>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>nl.systemsgenetics</groupId>
			<artifactId>genetica-libraries</artifactId>
			<version>1.0.7</version>
		</dependency>
		<dependency>
			<groupId>com.opencsv</groupId>
			<artifactId>opencsv</artifactId>
			<version>3.4</version>
		</dependency>

	</dependencies>
	<build>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-compiler-plugin</artifactId>
				<version>2.3.2</version>
				<configuration>
					<encoding>UTF-8</encoding>
				</configuration>
			</plugin>
			<plugin>
				<artifactId>maven-assembly-plugin</artifactId>
				<configuration>
					<descriptorRefs>
						<descriptorRef>jar-with-dependencies</descriptorRef>
					</descriptorRefs>
					<archive>
						<manifest>
							<mainClass>nl.systemsgenetics.eqtlinteractionanalyser.eqtlinteractionanalyser.EQTLInteractionAnalyser</mainClass>
							<addDefaultImplementationEntries>true</addDefaultImplementationEntries>
							<addDefaultSpecificationEntries>true</addDefaultSpecificationEntries>
						</manifest>
					</archive>
				</configuration>
				<executions>
					<execution>
						<phase>package</phase>
						<goals>
							<goal>single</goal>
						</goals>
					</execution>
				</executions>
			</plugin>
		</plugins>
	</build>
</project>
