<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <parent>
        <artifactId>gmql</artifactId>
        <groupId>it.polimi.genomics</groupId>
        <version>1.0</version>
    </parent>
    <modelVersion>4.0.0</modelVersion>
    <version>4.0</version>
    <artifactId>GMQL-Spark</artifactId>
    <packaging>jar</packaging>

    <name>${project.groupId}:${project.artifactId}</name>
    <description>Polimi GMQL, Big Data processing for Genomics</description>
    <inceptionYear>2014</inceptionYear>

    <distributionManagement>
        <snapshotRepository>
            <id>ossrh</id>
            <url>https://oss.sonatype.org/content/repositories/snapshots</url>
        </snapshotRepository>
        <repository>
            <id>ossrh</id>
            <url>https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
        </repository>
    </distributionManagement>


    <licenses>
        <license>
            <name>MIT License</name>
            <url>http://www.opensource.org/licenses/mit-license.php</url>
        </license>
    </licenses>

    <developers>
        <developer>
            <name>Abdulrahman Kaitoua</name>
            <email>abdulrahman.kaitoua@polimi.it</email>
            <organization>Politecnico Di Milano University</organization>
            <organizationUrl>https://github.com/akaitoua</organizationUrl>
        </developer>
    </developers>

    <scm>
        <connection>scm:git:git://github.com/DEIB-GECO/GMQL.git</connection>
        <developerConnection>scm:git:ssh://github.com/DEIB-GECO/GMQL.git</developerConnection>
        <url>http:///github.com/DEIB-GECO/GMQL</url>
      <tag>gmql-1.0</tag>
  </scm>

    <properties>
        <maven.compiler.source>1.8</maven.compiler.source>
        <maven.compiler.target>1.8</maven.compiler.target>
        <encoding>UTF-8</encoding>
        <scala.version>2.11.8</scala.version>
        <scalaCompatVersion>2.11</scalaCompatVersion>
        <maven.scala.checkConsistency>false</maven.scala.checkConsistency>
    </properties>

    <dependencies>

        <dependency>
            <groupId>it.polimi.genomics</groupId>
            <artifactId>GMQL-Core</artifactId>
            <version>2.0</version>
        </dependency>

        <dependency>
            <groupId>it.polimi.genomics</groupId>
            <artifactId>GMQL-Server</artifactId>
            <version>2.0</version>
        </dependency>

        <dependency>
            <groupId>it.polimi.genomics</groupId>
            <artifactId>GMQL-Profiler</artifactId>
            <version>1.0</version>
        </dependency>

        <dependency>
            <groupId>org.apache.spark</groupId>
            <artifactId>spark-core_2.11</artifactId>
            <version>2.2.0</version>
        </dependency>
        <!-- https://mvnrepository.com/artifact/org.apache.spark/spark-streaming_2.11 -->
        <dependency>
            <groupId>org.apache.spark</groupId>
            <artifactId>spark-streaming_2.11</artifactId>
            <version>2.2.0</version>
            <scope>provided</scope>
        </dependency>

        <!-- https://mvnrepository.com/artifact/org.apache.spark/spark-sql_2.11 -->
        <dependency>
            <groupId>org.apache.spark</groupId>
            <artifactId>spark-sql_2.11</artifactId>
            <version>2.2.0</version>
        <scope>provided</scope>
    </dependency>


    </dependencies>

    <build>
        <sourceDirectory>./src/main/scala</sourceDirectory>
        <plugins>
            <plugin>
                <groupId>org.scala-tools</groupId>
                <artifactId>maven-scala-plugin</artifactId>

                <executions>
                    <execution>
                        <id>compile</id>
                        <goals>
                            <goal>compile</goal>
                        </goals>
                        <phase>compile</phase>
                    </execution>

                    <execution>
                        <id>test-compile</id>
                        <goals>
                            <goal>testCompile</goal>
                        </goals>
                        <phase>test-compile</phase>
                    </execution>

                    <execution>
                        <phase>process-resources</phase>
                        <goals>
                            <goal>compile</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>3.3</version>
                <configuration>
                    <source>1.7</source>
                    <target>1.7</target>
                </configuration>
            </plugin>

            <!--<plugin>-->
                <!--<artifactId>maven-assembly-plugin</artifactId>-->
                <!--<version>2.4.1</version>-->
                <!--<configuration>-->
                    <!--<descriptorRefs>-->
                        <!--<descriptorRef>jar-with-dependencies</descriptorRef>-->
                    <!--</descriptorRefs>-->
                    <!--<archive>-->
                        <!--<manifestEntries>-->
                            <!--<Main-Class>it.polimi.genomics.spark.implementation.TestSelect</Main-Class>-->
                        <!--</manifestEntries>-->
                    <!--</archive>-->
                <!--</configuration>-->
                <!--<executions>-->
                    <!--<execution>-->
                        <!--<id>make-assembly</id>-->
                        <!--<phase>package</phase>-->
                        <!--<goals>-->
                            <!--<goal>single</goal>-->
                        <!--</goals>-->
                    <!--</execution>-->
                <!--</executions>-->
            <!--</plugin>-->

            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-jar-plugin</artifactId>
                <configuration>
                    <archive>
                        <manifest>
                            <mainClass>it.polimi.genomics.spark.implementation.TestSelect</mainClass>
                        </manifest>
                    </archive>
                </configuration>
            </plugin>

            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-shade-plugin</artifactId>
                <version>2.3</version>
                <executions>
                    <execution>
                        <phase>package</phase>
                        <goals>
                            <goal>shade</goal>
                        </goals>
                    </execution>
                </executions>
                <configuration>
                    <filters>
                        <filter>
                            <artifact>*:*</artifact>
                            <excludes>
                                <exclude>META-INF/*.SF</exclude>
                                <exclude>META-INF/*.DSA</exclude>
                                <exclude>META-INF/*.RSA</exclude>
                            </excludes>
                        </filter>
                    </filters>
                    <finalName>uber-${project.artifactId}-${project.version}</finalName>
                </configuration>
            </plugin>
            <plugin>
                <groupId>net.alchim31.maven</groupId>
                <artifactId>scala-maven-plugin</artifactId>
                <version>3.2.2</version>
                <executions>
                    <execution>
                        <id>Scaladoc</id>
                        <goals>
                            <goal>doc</goal>
                        </goals>
                        <phase>prepare-package</phase>
                        <configuration>
                            <args>
                                <arg>-no-link-warnings</arg>
                            </args>
                        </configuration>
                    </execution>
                    <execution>
                        <id>Compile</id>
                        <goals>
                            <goal>compile</goal>
                            <goal>testCompile</goal>
                        </goals>
                        <configuration>
                            <args>
                                <arg>-dependencyfile</arg>
                                <arg>${project.build.directory}/.scala_dependencies</arg>
                            </args>
                        </configuration>
                    </execution>
                </executions>
            </plugin>

            <plugin>
            <groupId>org.sonatype.plugins</groupId>
            <artifactId>nexus-staging-maven-plugin</artifactId>
            <version>1.6.7</version>
            <extensions>true</extensions>
            <configuration>
                <serverId>ossrh</serverId>
                <nexusUrl>https://oss.sonatype.org/</nexusUrl>
                <autoReleaseAfterClose>true</autoReleaseAfterClose>
            </configuration>
            </plugin>
        </plugins>
    </build>
</project>
