<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>
    <parent>
        <artifactId>gmql</artifactId>
        <groupId>it.polimi.genomics</groupId>
        <version>5.0</version>
    </parent>
    <artifactId>GMQL-Repository</artifactId>
    <packaging>jar</packaging>

    <description>Module for the management of the GMQL datasets</description>

    <dependencies>

        <dependency>
            <groupId>it.polimi.genomics</groupId>
            <artifactId>GMQL-Core</artifactId>
            <version>5.0</version>
        </dependency>


        
        
            
            
            
        

        
        
            
            
            
        

        
        
            
            
            
        
        <dependency>
            <groupId>org.apache.hadoop</groupId>
            <artifactId>hadoop-hdfs</artifactId>
            <version>2.7.3</version>
            <exclusions>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>

        <dependency>
            <groupId>org.apache.hadoop</groupId>
            <artifactId>hadoop-client</artifactId>
            <version>2.7.3</version>
            <exclusions>
                <exclusion>
                    <groupId>jetty</groupId>
                    <artifactId>org.mortbay.jetty</artifactId>
                </exclusion>
                <exclusion>
                    <groupId>javax.servlet</groupId>
                    <artifactId>servlet-api</artifactId>
                </exclusion>
                <exclusion>
                    <groupId>io.netty</groupId>
                    <artifactId>netty</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.apache.hadoop</groupId>
            <artifactId>hadoop-common</artifactId>
            <version>2.7.3</version>
        </dependency>

        <dependency>
            <groupId>org.scala-lang</groupId>
            <artifactId>scala-xml</artifactId>
            <version>2.11.0-M4</version>
        </dependency>

        
        <dependency>
            <groupId>ch.qos.logback</groupId>
            <artifactId>logback-classic</artifactId>
            <version>1.2.2</version>
        </dependency>

        <dependency>
            <groupId>ch.qos.logback</groupId>
            <artifactId>logback-core</artifactId>
            <version>1.2.2</version>
        </dependency>

        <dependency>
            <groupId>org.slf4j</groupId>
            <artifactId>slf4j-api</artifactId>
            <version>1.7.21</version>
        </dependency>

        <dependency>
            <groupId>log4j</groupId>
            <artifactId>log4j</artifactId>
            <version>1.2.17</version>
        </dependency>

    </dependencies>


    <build>
        <sourceDirectory>./src/main/scala</sourceDirectory>
        <plugins>
            <plugin>
                <groupId>org.scala-tools</groupId>
                <artifactId>maven-scala-plugin</artifactId>

                <executions>
                    <execution>
                        <id>compile</id>
                        <goals>
                            <goal>compile</goal>
                        </goals>
                        <phase>compile</phase>
                    </execution>

                    <execution>
                        <id>test-compile</id>
                        <goals>
                            <goal>testCompile</goal>
                        </goals>
                        <phase>test-compile</phase>
                    </execution>

                    <execution>
                        <phase>process-resources</phase>
                        <goals>
                            <goal>compile</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>3.3</version>
                <configuration>
                    <source>1.8</source>
                    <target>1.8</target>
                </configuration>
            </plugin>

            <plugin>
                <artifactId>maven-assembly-plugin</artifactId>
                <version>2.4.1</version>
                <configuration>
                    <descriptorRefs>
                        <descriptorRef>jar-with-dependencies</descriptorRef>
                    </descriptorRefs>
                    <archive>
                        <manifestEntries>
                            <Main-Class>it.polimi.genomics.repository.test</Main-Class>
                        </manifestEntries>
                    </archive>
                </configuration>
                <executions>
                    <execution>
                        <id>make-assembly</id>
                        <phase>package</phase>
                        <goals>
                            <goal>single</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>

            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-jar-plugin</artifactId>
                <configuration>
                    <archive>
                        <manifest>
                            <mainClass>it.polimi.genomics.repository.FSRepository.testLFSRepository</mainClass>
                        </manifest>
                    </archive>
                </configuration>
            </plugin>

            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-shade-plugin</artifactId>
                <version>2.3</version>
                <executions>
                    <execution>
                        <phase>package</phase>
                        <goals>
                            <goal>shade</goal>
                        </goals>
                    </execution>
                </executions>
                <configuration>
                    <filters>
                        <filter>
                            <artifact>*:*</artifact>
                            <excludes>
                                <exclude>META-INF/*.SF</exclude>
                                <exclude>META-INF/*.DSA</exclude>
                                <exclude>META-INF/*.RSA</exclude>
                            </excludes>
                        </filter>
                    </filters>
                    <finalName>uber-${project.artifactId}-${project.version}</finalName>
                </configuration>
            </plugin>
            <plugin>
                <groupId>net.alchim31.maven</groupId>
                <artifactId>scala-maven-plugin</artifactId>
                <version>3.2.2</version>
                <executions>
                    <execution>
                        <id>Scaladoc</id>
                        <goals>
                            <goal>doc</goal>
                        </goals>
                        <phase>prepare-package</phase>
                        <configuration>
                            <args>
                                <arg>-no-link-warnings</arg>
                            </args>
                        </configuration>
                    </execution>
                    <execution>
                        <id>Compile</id>
                        <goals>
                            <goal>compile</goal>
                            <goal>testCompile</goal>
                        </goals>
                        <configuration>
                            <args>
                                <arg>-dependencyfile</arg>
                                <arg>${project.build.directory}/.scala_dependencies</arg>
                            </args>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
        </plugins>
    </build>
</project>