edu.umd.hooka.alignment
Class PartialCountContainer

java.lang.Object
  edu.umd.hooka.alignment.PartialCountContainer

All Implemented Interfaces:

Cloneable, Writable

public class PartialCountContainer
extends Object
implements Writable, Cloneable

Store anything that stores partial counts.

Author:

redpony

Field Summary

static int	CONTENT_ARRAY
static int	CONTENT_ATABLE

Constructor Summary

PartialCountContainer()

PartialCountContainer(Writable content)

Method Summary

Object	clone()
Writable	getContent()
int	getType()
void	normalize(boolean variationalBayes, float alpha) TODO: atable normalization currently doesn't support VB or an alpha parameter.
void	plusEquals(PartialCountContainer rhs)
void	readFields(DataInput in)
void	setContent(Writable content)
String	toString()
void	write(DataOutput out)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

CONTENT_ATABLE

public static final int CONTENT_ATABLE

See Also:

Constant Field Values

CONTENT_ARRAY

public static final int CONTENT_ARRAY

See Also:

Constant Field Values

Constructor Detail

PartialCountContainer

public PartialCountContainer()

PartialCountContainer

public PartialCountContainer(Writable content)

Method Detail

clone

public Object clone()

Overrides:

clone in class Object

setContent

public void setContent(Writable content)

getContent

public Writable getContent()

getType

public int getType()

plusEquals

public void plusEquals(PartialCountContainer rhs)

normalize

public void normalize(boolean variationalBayes,
                      float alpha)

TODO: atable normalization currently doesn't support VB or an alpha parameter. This should probably be a separate param, ie. alpha2 and vb 2.

Parameters:

variationalBayes -

alpha -

readFields

public void readFields(DataInput in)
                throws IOException

Specified by:

readFields in interface Writable

Throws:

IOException

write

public void write(DataOutput out)
           throws IOException

Specified by:

write in interface Writable

Throws:

IOException

toString

public String toString()

Overrides:

toString in class Object