edu.umd.hooka.alignment
Class AssociationScoreTools

java.lang.Object
  edu.umd.hooka.alignment.AssociationScoreTools

public class AssociationScoreTools
extends Object

Constructor Summary

AssociationScoreTools()

Method Summary

static double	computeLLR(int countEF, int countE, int countF, int N) Computes the log-likelihood ratio
static double	fishersExact(int countEF, int countE, int countF, int N)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AssociationScoreTools

public AssociationScoreTools()

Method Detail

computeLLR

public static double computeLLR(int countEF,
                                int countE,
                                int countF,
                                int N)

Computes the log-likelihood ratio

Parameters:

countEF -

countE -

countF -

N -

fishersExact

public static double fishersExact(int countEF,
                                  int countE,
                                  int countF,
                                  int N)