A B C D E F G I J K N O P R S T U V W Z
All Classes All Packages

A

ArrayParams - Class in com.bc.zarr

The class ArrayParams implements the Builder pattern.

ArrayParams() - Constructor for class com.bc.zarr.ArrayParams

ArrayParams.Params - Class in com.bc.zarr

ArrayParams builder static inner class.

B

byteOrder(ByteOrder) - Method in class com.bc.zarr.ArrayParams

Sets the optional byteOrder and returns a reference to this Builder so that the methods can be chained together.

C

chunked(boolean) - Method in class com.bc.zarr.ArrayParams

Sets the optional chunked and returns a reference to this Builder so that the methods can be chained together.

ChunkReaderWriter - Class in com.bc.zarr.chunk

ChunkReaderWriterImpl_Byte - Class in com.bc.zarr.chunk

ChunkReaderWriterImpl_Byte(Compressor, int[], Number, Store) - Constructor for class com.bc.zarr.chunk.ChunkReaderWriterImpl_Byte

ChunkReaderWriterImpl_Double - Class in com.bc.zarr.chunk

ChunkReaderWriterImpl_Double(ByteOrder, Compressor, int[], Number, Store) - Constructor for class com.bc.zarr.chunk.ChunkReaderWriterImpl_Double

ChunkReaderWriterImpl_Float - Class in com.bc.zarr.chunk

ChunkReaderWriterImpl_Float(ByteOrder, Compressor, int[], Number, Store) - Constructor for class com.bc.zarr.chunk.ChunkReaderWriterImpl_Float

ChunkReaderWriterImpl_Integer - Class in com.bc.zarr.chunk

ChunkReaderWriterImpl_Integer(ByteOrder, Compressor, int[], Number, Store) - Constructor for class com.bc.zarr.chunk.ChunkReaderWriterImpl_Integer

ChunkReaderWriterImpl_Long - Class in com.bc.zarr.chunk

ChunkReaderWriterImpl_Long(ByteOrder, Compressor, int[], Number, Store) - Constructor for class com.bc.zarr.chunk.ChunkReaderWriterImpl_Long

ChunkReaderWriterImpl_Short - Class in com.bc.zarr.chunk

ChunkReaderWriterImpl_Short(ByteOrder, Compressor, int[], Number, Store) - Constructor for class com.bc.zarr.chunk.ChunkReaderWriterImpl_Short

chunks(int...) - Method in class com.bc.zarr.ArrayParams

Sets the optional chunks and returns a reference to this Builder so that the methods can be chained together.

close() - Method in interface com.bc.zarr.storage.Store

close() - Method in class com.bc.zarr.storage.ZipStore

com.bc.zarr - package com.bc.zarr

com.bc.zarr.chunk - package com.bc.zarr.chunk

com.bc.zarr.storage - package com.bc.zarr.storage

com.bc.zarr.ucar - package com.bc.zarr.ucar

compress(InputStream, OutputStream) - Method in class com.bc.zarr.Compressor

compress(InputStream, OutputStream) - Method in class com.bc.zarr.CompressorFactory.BloscCompressor

compressor - Variable in class com.bc.zarr.chunk.ChunkReaderWriter

compressor(Compressor) - Method in class com.bc.zarr.ArrayParams

Sets the optional compressor and returns a reference to this Builder so that the methods can be chained together.

Compressor - Class in com.bc.zarr

Compressor() - Constructor for class com.bc.zarr.Compressor

CompressorFactory - Class in com.bc.zarr

CompressorFactory() - Constructor for class com.bc.zarr.CompressorFactory

CompressorFactory.BloscCompressor - Class in com.bc.zarr

computeChunkIndices(int[], int[], int[], int[]) - Static method in class com.bc.zarr.ZarrUtils

computeSize(int[]) - Static method in class com.bc.zarr.ZarrUtils

computeSizeInteger(int[]) - Static method in class com.bc.zarr.ZarrUtils

consolidateMetadata(Store) - Static method in class com.bc.zarr.ZarrUtils

copy(int[], Array, Array) - Static method in class com.bc.zarr.ucar.PartialDataCopier

Offset describes the displacement between source and target array.

create() - Static method in class com.bc.zarr.ZarrGroup

create(ArrayParams) - Static method in class com.bc.zarr.ZarrArray

create(ArrayParams, Map<String, Object>) - Static method in class com.bc.zarr.ZarrArray

create(Compressor, DataType, ByteOrder, int[], Number, Store) - Static method in class com.bc.zarr.chunk.ChunkReaderWriter

create(Store) - Static method in class com.bc.zarr.ZarrGroup

create(Store, ArrayParams) - Static method in class com.bc.zarr.ZarrArray

create(Store, ArrayParams, Map<String, Object>) - Static method in class com.bc.zarr.ZarrArray

create(Store, Map<String, Object>) - Static method in class com.bc.zarr.ZarrGroup

create(ZarrPath, Store, ArrayParams) - Static method in class com.bc.zarr.ZarrArray

create(ZarrPath, Store, ArrayParams, Map<String, Object>) - Static method in class com.bc.zarr.ZarrArray

create(String) - Static method in class com.bc.zarr.ZarrGroup

create(String, ArrayParams) - Static method in class com.bc.zarr.ZarrArray

create(String, ArrayParams, Map<String, Object>) - Static method in class com.bc.zarr.ZarrArray

create(String, Object...) - Static method in class com.bc.zarr.CompressorFactory

Creates a new Compressor instance according to the id and the given properties.

create(String, Map<String, Object>) - Static method in class com.bc.zarr.CompressorFactory

Creates a new Compressor instance according to the id and the given properties.

create(String, Map<String, Object>) - Static method in class com.bc.zarr.ZarrGroup

create(Path) - Static method in class com.bc.zarr.ZarrGroup

create(Path, ArrayParams) - Static method in class com.bc.zarr.ZarrArray

create(Path, ArrayParams, Map<String, Object>) - Static method in class com.bc.zarr.ZarrArray

create(Path, Map<String, Object>) - Static method in class com.bc.zarr.ZarrGroup

create(Map<String, Object>) - Static method in class com.bc.zarr.CompressorFactory

Creates a new Compressor instance according to the given properties.

createArray(String, ArrayParams) - Method in class com.bc.zarr.ZarrGroup

createArray(String, ArrayParams, Map<String, Object>) - Method in class com.bc.zarr.ZarrGroup

createArrayWithGivenStorage(Object, int[]) - Static method in class com.bc.zarr.ucar.NetCDF_Util

createChunkFilename(int[], String) - Static method in class com.bc.zarr.ZarrUtils

createDataBuffer(DataType, int[]) - Static method in class com.bc.zarr.ZarrUtils

createDataBufferFilledWith(Number, DataType, int[]) - Static method in class com.bc.zarr.ZarrUtils

createDefaultCompressor() - Static method in class com.bc.zarr.CompressorFactory

createFilled(DataType) - Method in class com.bc.zarr.chunk.ChunkReaderWriter

createFilledArray(DataType, int[], Number) - Static method in class com.bc.zarr.ucar.NetCDF_Util

createSubGroup(String) - Method in class com.bc.zarr.ZarrGroup

createSubGroup(String, Map<String, Object>) - Method in class com.bc.zarr.ZarrGroup

D

dataType(DataType) - Method in class com.bc.zarr.ArrayParams

Sets the optional dataType and returns a reference to this Builder so that the methods can be chained together.

DataType - Enum in com.bc.zarr

defaultBlocksize - Static variable in class com.bc.zarr.CompressorFactory.BloscCompressor

defaultCLevel - Static variable in class com.bc.zarr.CompressorFactory.BloscCompressor

defaultCname - Static variable in class com.bc.zarr.CompressorFactory.BloscCompressor

defaultNumThreads - Static variable in class com.bc.zarr.CompressorFactory.BloscCompressor

defaultProperties - Static variable in class com.bc.zarr.CompressorFactory.BloscCompressor

defaultShuffle - Static variable in class com.bc.zarr.CompressorFactory.BloscCompressor

delete(String) - Method in class com.bc.zarr.storage.FileSystemStore

delete(String) - Method in class com.bc.zarr.storage.InMemoryStore

delete(String) - Method in interface com.bc.zarr.storage.Store

delete(String) - Method in class com.bc.zarr.storage.ZipStore

deleteDirectoryTreeRecursively(Path) - Static method in class com.bc.zarr.ZarrUtils

dimensionSeparator(DimensionSeparator) - Method in class com.bc.zarr.ArrayParams

Sets the optional dimension_separator and returns a reference to this Builder so that the methods can be chained together.

DimensionSeparator - Enum in com.bc.zarr

DOT - com.bc.zarr.DimensionSeparator

The "." dimension separator to write chunks not nested.

E

ensureDirectory(Path) - Static method in class com.bc.zarr.ZarrUtils

ensureFileExistAndIsReadable(Path) - Static method in class com.bc.zarr.ZarrUtils

F

f4 - com.bc.zarr.DataType

f8 - com.bc.zarr.DataType

FILENAME_DOT_ZARRAY - Static variable in class com.bc.zarr.ZarrConstants

FILENAME_DOT_ZATTRS - Static variable in class com.bc.zarr.ZarrConstants

FILENAME_DOT_ZGROUP - Static variable in class com.bc.zarr.ZarrConstants

FileSystemStore - Class in com.bc.zarr.storage

FileSystemStore(String, FileSystem) - Constructor for class com.bc.zarr.storage.FileSystemStore

FileSystemStore(Path) - Constructor for class com.bc.zarr.storage.FileSystemStore

fill - Variable in class com.bc.zarr.chunk.ChunkReaderWriter

fillValue(Number) - Method in class com.bc.zarr.ArrayParams

Sets the optional fillValue and returns a reference to this Builder so that the methods can be chained together.

fromJson(Reader, Class<T>) - Static method in class com.bc.zarr.ZarrUtils

G

getArrayKeys() - Method in class com.bc.zarr.storage.FileSystemStore

getArrayKeys() - Method in class com.bc.zarr.storage.InMemoryStore

getArrayKeys() - Method in interface com.bc.zarr.storage.Store

getArrayKeys() - Method in class com.bc.zarr.storage.ZipStore

getArrayKeys() - Method in class com.bc.zarr.ZarrGroup

getAttributes() - Method in class com.bc.zarr.ZarrArray

getAttributes() - Method in class com.bc.zarr.ZarrGroup

getBlocksize() - Method in class com.bc.zarr.CompressorFactory.BloscCompressor

getByteOrder() - Method in class com.bc.zarr.ArrayParams.Params

getByteOrder() - Method in class com.bc.zarr.ZarrArray

getByteOrder() - Method in class com.bc.zarr.ZarrHeader

getChunks() - Method in class com.bc.zarr.ArrayParams.Params

getChunks() - Method in class com.bc.zarr.ZarrArray

getChunks() - Method in class com.bc.zarr.ZarrHeader

getClevel() - Method in class com.bc.zarr.CompressorFactory.BloscCompressor

getCname() - Method in class com.bc.zarr.CompressorFactory.BloscCompressor

getCompressor() - Method in class com.bc.zarr.ArrayParams.Params

getCompressor() - Method in class com.bc.zarr.ZarrArray

getCompressor() - Method in class com.bc.zarr.ZarrHeader

getDataType() - Method in class com.bc.zarr.ArrayParams.Params

getDataType() - Method in class com.bc.zarr.ZarrArray

getDataType(DataType) - Static method in class com.bc.zarr.ucar.NetCDF_Util

getDefaultCompressorProperties() - Static method in class com.bc.zarr.CompressorFactory

getDimension_separator() - Method in class com.bc.zarr.ZarrHeader

getDimensionSeparator() - Method in class com.bc.zarr.ArrayParams.Params

getDimensionSeparator() - Method in class com.bc.zarr.ZarrArray

getDimensionSeparator() - Method in class com.bc.zarr.ZarrHeader

getDtype() - Method in class com.bc.zarr.ZarrHeader

getFill_value() - Method in class com.bc.zarr.ZarrHeader

getFillValue() - Method in class com.bc.zarr.ArrayParams.Params

getFillValue() - Method in class com.bc.zarr.ZarrArray

getGroupKeys() - Method in class com.bc.zarr.storage.FileSystemStore

getGroupKeys() - Method in class com.bc.zarr.storage.InMemoryStore

getGroupKeys() - Method in interface com.bc.zarr.storage.Store

getGroupKeys() - Method in class com.bc.zarr.storage.ZipStore

getGroupKeys() - Method in class com.bc.zarr.ZarrGroup

getId() - Method in class com.bc.zarr.Compressor

getId() - Method in class com.bc.zarr.CompressorFactory.BloscCompressor

getInputStream(String) - Method in class com.bc.zarr.storage.FileSystemStore

getInputStream(String) - Method in class com.bc.zarr.storage.InMemoryStore

getInputStream(String) - Method in interface com.bc.zarr.storage.Store

getInputStream(String) - Method in class com.bc.zarr.storage.ZipStore

getKeysEndingWith(String) - Method in class com.bc.zarr.storage.FileSystemStore

getKeysEndingWith(String) - Method in class com.bc.zarr.storage.InMemoryStore

getKeysEndingWith(String) - Method in interface com.bc.zarr.storage.Store

getKeysEndingWith(String) - Method in class com.bc.zarr.storage.ZipStore

getNumThreads() - Method in class com.bc.zarr.CompressorFactory.BloscCompressor

getOutputStream(String) - Method in class com.bc.zarr.storage.FileSystemStore

getOutputStream(String) - Method in class com.bc.zarr.storage.InMemoryStore

getOutputStream(String) - Method in interface com.bc.zarr.storage.Store

getOutputStream(String) - Method in class com.bc.zarr.storage.ZipStore

getRawDataType() - Method in class com.bc.zarr.ZarrHeader

getRelativeLeafKeys(String) - Method in class com.bc.zarr.storage.FileSystemStore

getRelativeLeafKeys(String) - Method in class com.bc.zarr.storage.InMemoryStore

getRelativeLeafKeys(String) - Method in interface com.bc.zarr.storage.Store

getRelativeLeafKeys(String) - Method in class com.bc.zarr.storage.ZipStore

getSeparatorChar() - Method in enum com.bc.zarr.DimensionSeparator

getShape() - Method in class com.bc.zarr.ArrayParams.Params

getShape() - Method in class com.bc.zarr.ZarrArray

getShape() - Method in class com.bc.zarr.ZarrHeader

getShuffle() - Method in class com.bc.zarr.CompressorFactory.BloscCompressor

getSize() - Method in class com.bc.zarr.chunk.ChunkReaderWriter

I

i1 - com.bc.zarr.DataType

i2 - com.bc.zarr.DataType

i4 - com.bc.zarr.DataType

i8 - com.bc.zarr.DataType

InMemoryStore - Class in com.bc.zarr.storage

InMemoryStore() - Constructor for class com.bc.zarr.storage.InMemoryStore

isChunked() - Method in class com.bc.zarr.ArrayParams.Params

J

JZarrException - Exception in com.bc.zarr

JZarrException(String, Throwable) - Constructor for exception com.bc.zarr.JZarrException

K

keyBlocksize - Static variable in class com.bc.zarr.CompressorFactory.BloscCompressor

keyClevel - Static variable in class com.bc.zarr.CompressorFactory.BloscCompressor

keyCname - Static variable in class com.bc.zarr.CompressorFactory.BloscCompressor

keyNumThreads - Static variable in class com.bc.zarr.CompressorFactory.BloscCompressor

keyShuffle - Static variable in class com.bc.zarr.CompressorFactory.BloscCompressor

N

NetCDF_Util - Class in com.bc.zarr.ucar

NetCDF_Util() - Constructor for class com.bc.zarr.ucar.NetCDF_Util

netCDFOrder(int[]) - Static method in class com.bc.zarr.ucar.NetCDF_Util

normalizeStoragePath(String) - Static method in class com.bc.zarr.ZarrUtils

nullCompressor - Static variable in class com.bc.zarr.CompressorFactory

O

open(Store) - Static method in class com.bc.zarr.ZarrArray

open(Store) - Static method in class com.bc.zarr.ZarrGroup

open(ZarrPath, Store) - Static method in class com.bc.zarr.ZarrArray

open(String) - Static method in class com.bc.zarr.ZarrArray

open(String) - Static method in class com.bc.zarr.ZarrGroup

open(Path) - Static method in class com.bc.zarr.ZarrArray

open(Path) - Static method in class com.bc.zarr.ZarrGroup

openArray(String) - Method in class com.bc.zarr.ZarrGroup

openSubGroup(String) - Method in class com.bc.zarr.ZarrGroup

order - Variable in class com.bc.zarr.chunk.ChunkReaderWriter

P

PartialDataCopier - Class in com.bc.zarr.ucar

PartialDataCopier() - Constructor for class com.bc.zarr.ucar.PartialDataCopier

R

read() - Method in class com.bc.zarr.chunk.ZarrInputStreamAdapter

read() - Method in class com.bc.zarr.ZarrArray

read(byte[]) - Method in class com.bc.zarr.chunk.ZarrInputStreamAdapter

read(int[]) - Method in class com.bc.zarr.ZarrArray

read(int[], int[]) - Method in class com.bc.zarr.ZarrArray

read(Object, int[]) - Method in class com.bc.zarr.ZarrArray

read(Object, int[], int[]) - Method in class com.bc.zarr.ZarrArray

read(String) - Method in class com.bc.zarr.chunk.ChunkReaderWriter

read(String) - Method in class com.bc.zarr.chunk.ChunkReaderWriterImpl_Byte

read(String) - Method in class com.bc.zarr.chunk.ChunkReaderWriterImpl_Double

read(String) - Method in class com.bc.zarr.chunk.ChunkReaderWriterImpl_Float

read(String) - Method in class com.bc.zarr.chunk.ChunkReaderWriterImpl_Integer

read(String) - Method in class com.bc.zarr.chunk.ChunkReaderWriterImpl_Long

read(String) - Method in class com.bc.zarr.chunk.ChunkReaderWriterImpl_Short

readAttributes(ZarrPath, Store) - Static method in class com.bc.zarr.ZarrUtils

S

shape(int...) - Method in class com.bc.zarr.ArrayParams

Sets the mandatory shape and returns a reference to this Builder so that the methods can be chained together.

SLASH - com.bc.zarr.DimensionSeparator

The "/" dimension separator to write nested chunks.

store - Variable in class com.bc.zarr.chunk.ChunkReaderWriter

Store - Interface in com.bc.zarr.storage

Store interface according to https://zarr.readthedocs.io/en/stable/spec/v2.html#storage A Zarr array can be stored in any storage system that provides a key/value interface, where a key is an ASCII string and a value is an arbitrary sequence of bytes, and the supported operations are read (get the sequence of bytes associated with a given key), write (set the sequence of bytes associated with a given key) and delete (remove a key/value pair).

supportedCnames - Static variable in class com.bc.zarr.CompressorFactory.BloscCompressor

supportedShuffle - Static variable in class com.bc.zarr.CompressorFactory.BloscCompressor

T

toBuilder() - Method in class com.bc.zarr.ArrayParams.Params

toJson(Object) - Static method in class com.bc.zarr.ZarrUtils

toJson(Object, boolean) - Static method in class com.bc.zarr.ZarrUtils

toJson(Object, Writer) - Static method in class com.bc.zarr.ZarrUtils

toJson(Object, Writer, boolean) - Static method in class com.bc.zarr.ZarrUtils

toString() - Method in class com.bc.zarr.Compressor

toString() - Method in class com.bc.zarr.CompressorFactory.BloscCompressor

toString() - Method in class com.bc.zarr.ZarrArray

toString() - Method in class com.bc.zarr.ZarrGroup

U

u1 - com.bc.zarr.DataType

u2 - com.bc.zarr.DataType

u4 - com.bc.zarr.DataType

uncompress(InputStream, OutputStream) - Method in class com.bc.zarr.Compressor

uncompress(InputStream, OutputStream) - Method in class com.bc.zarr.CompressorFactory.BloscCompressor

V

valueOf(String) - Static method in enum com.bc.zarr.DataType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum com.bc.zarr.DimensionSeparator

Returns the enum constant of this type with the specified name.

values() - Static method in enum com.bc.zarr.DataType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum com.bc.zarr.DimensionSeparator

Returns an array containing the constants of this enum type, in the order they are declared.

W

write(Number) - Method in class com.bc.zarr.ZarrArray

write(Number, int[], int[]) - Method in class com.bc.zarr.ZarrArray

write(Object, int[], int[]) - Method in class com.bc.zarr.ZarrArray

write(String, Array) - Method in class com.bc.zarr.chunk.ChunkReaderWriter

write(String, Array) - Method in class com.bc.zarr.chunk.ChunkReaderWriterImpl_Byte

write(String, Array) - Method in class com.bc.zarr.chunk.ChunkReaderWriterImpl_Double

write(String, Array) - Method in class com.bc.zarr.chunk.ChunkReaderWriterImpl_Float

write(String, Array) - Method in class com.bc.zarr.chunk.ChunkReaderWriterImpl_Integer

write(String, Array) - Method in class com.bc.zarr.chunk.ChunkReaderWriterImpl_Long

write(String, Array) - Method in class com.bc.zarr.chunk.ChunkReaderWriterImpl_Short

writeAttributes(Map<String, Object>) - Method in class com.bc.zarr.ZarrArray

writeAttributes(Map<String, Object>) - Method in class com.bc.zarr.ZarrGroup

writeAttributes(Map<String, Object>, ZarrPath, Store) - Static method in class com.bc.zarr.ZarrUtils

Z

ZARR_FORMAT - Static variable in class com.bc.zarr.ZarrConstants

ZarrArray - Class in com.bc.zarr

ZarrConstants - Class in com.bc.zarr

ZarrConstants() - Constructor for class com.bc.zarr.ZarrConstants

ZarrGroup - Class in com.bc.zarr

ZarrHeader - Class in com.bc.zarr

ZarrHeader(int[], int[], String, ByteOrder, Number, Compressor, String) - Constructor for class com.bc.zarr.ZarrHeader

ZarrInputStreamAdapter - Class in com.bc.zarr.chunk

ZarrInputStreamAdapter(ImageInputStream) - Constructor for class com.bc.zarr.chunk.ZarrInputStreamAdapter

ZarrUtils - Class in com.bc.zarr

ZarrUtils() - Constructor for class com.bc.zarr.ZarrUtils

ZipStore - Class in com.bc.zarr.storage

ZipStore(Path) - Constructor for class com.bc.zarr.storage.ZipStore

A B C D E F G I J K N O P R S T U V W Z
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