MTD	mzTab-version	2.0.0-M
MTD	mzTab-ID	PRIDE_1234
MTD	title	My first test experiment
MTD	description	An experiment investigating the effects of Il-6.
MTD	sample_processing[1]	[SEP, SEP:00173, SDS PAGE, ]
MTD	sample_processing[2]	[SEP, SEP:00142, enzyme digestion, ]|[MS, MS:1001251, Trypsin, ]
MTD	instrument[1]-name	[MS, MS:100049, LTQ Orbitrap, ]
MTD	instrument[1]-source	[MS, MS:1000073, ESI, ]
MTD	instrument[1]-analyzer[1]	[MS, MS:1000291, linear ion trap, ]
MTD	instrument[1]-detector	[MS, MS:1000253, electron multiplier, ]
MTD	instrument[2]-name	[MS, MS:1000031, Instrument model, name of the instrument not included in the CV]
MTD	instrument[2]-source	[MS, MS:1000598, ETD, ]
MTD	instrument[2]-analyzer	[MS, MS:1000484, orbitrap, ]
MTD	instrument[2]-detector	[MS, MS:1000348, focal plane collector, ]
MTD	software[1]	[MS, MS:1001207, Mascot, 2.3]
MTD	software[1]-setting[1]	Fragment tolerance = 0.1Da
MTD	software[1]-setting[2]	Parent tolerance = 0.5Da
MTD	software[2]	[MS, MS:1001561, Scaffold, 1.0]
MTD	publication[1]	pubmed:21063943|doi:10.1007/978-1-60761-987-1_6
MTD	publication[2]	pubmed:20615486|doi:10.1016/j.jprot.2010.06.008
MTD	contact[1]-name	James D. Watson
MTD	contact[1]-affiliation	Cambridge University, UK
MTD	contact[1]-email	watson@cam.ac.uk
MTD	contact[2]-name	Francis Crick
MTD	contact[2]-affiliation	Cambridge University, UK
MTD	contact[2]-email	crick@cam.ac.uk
MTD	uri[1]	http://www.ebi.ac.uk/pride/url/to/experiment
MTD	uri[2]	http://proteomecentral.proteomexchange.org/cgi/GetDataset
MTD	quantification_method	[MS, MS:1001834, LC-MS label-free quantitation analysis, ]
MTD	ms_run[1]-format	[MS, MS:1000584, mzML file, ]
MTD	ms_run[1]-id_format	[MS, MS:1001530, mzML unique identifier, ]
MTD	ms_run[1]-scan_polarity	[MS, MS:1000130, positive scan, ]
MTD	ms_run[1]-fragmentation_method	[MS, MS:1000133, CID, ]
MTD	ms_run[1]-location	ftp://ftp.ebi.ac.uk/path/to/file
MTD	ms_run[2]-format	[MS, MS:1001062, Mascot MGF file, ]
MTD	ms_run[2]-scan_polarity	[MS, MS:1000130, positive scan, ]
MTD	ms_run[2]-location	ftp://ftp.ebi.ac.uk/path/to/file
MTD	ms_run[2]-hash	de9f2c7fd25e1b3afad3e85a0bd17d9b100db4b3
MTD	ms_run[2]-hash_method	[MS, MS:1000569, SHA-1, ]
MTD	sample[1]-species[1]	[NEWT, 9606, Homo sapiens (Human), ]
MTD	sample[1]-species[2]	[NEWT, 573824, Human rhinovirus 1, ]
MTD	sample[1]-tissue[1]	[BTO, BTO:0000759, liver, ]
MTD	sample[1]-cell_type[1]	[CL, CL:0000182, hepatocyte, ]
MTD	sample[1]-disease[1]	[DOID, DOID:684, hepatocellular carcinoma, ]
MTD	sample[1]-disease[2]	[DOID, DOID:9451, alcoholic fatty liver, ]
MTD	sample[1]-description	Hepatocellular carcinoma samples.
MTD	sample[1]-custom[1]	[, , Extraction date, 2011-12-21]
MTD	sample[1]-custom[2]	[, , Extraction reason, liver biopsy]
MTD	sample[2]-species[1]	[NEWT, 9606, Homo sapiens (Human), ]
MTD	sample[2]-species[2]	[NEWT, 12130, Human rhinovirus 2, ]
MTD	sample[2]-description	Healthy control samples.
MTD	assay[1]-sample_ref	sample[1]
MTD	assay[1]-ms_run_ref	ms_run[1]
MTD	assay[2]-sample_ref	sample[2]
MTD	assay[2]-ms_run_ref	ms_run[2]
MTD	study_variable[1]	Group A
MTD	study_variable[1]-description	description Group B (spike-in 0.74 fmol/uL)
MTD	study_variable[1]-assay_refs	assay[1], assay[2]
MTD	study_variable[2]	Group B
MTD	study_variable[2]-description	description Group B (spike-in 0.74 fmol/uL)
MTD	study_variable[2]-assay_refs	assay[1], assay[2]
MTD	cv[1]-label	MS
MTD	cv[1]-full_name	MS
MTD	cv[1]-version	3.54.0
MTD	cv[1]-uri	http://psidev.cvs.sourceforge.net/viewvc/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo
MTD	colunit-small_molecule	retention_time=[UO, UO:0000031, minute, ]
MTD	custom[1]	[, , MS operator, Florian]
MTD	database[1]	[, , "no database", null]
MTD	database[1]-prefix	null
MTD	database[1]-version	Unknown
MTD	database[1]-uri	null
MTD	small_molecule-quantification_unit	[PSI-MS, MS:1002887, Progenesis QI normalised abundance, ]
MTD	small_molecule_feature-quantification_unit	[PSI-MS, MS:1002887, Progenesis QI normalised abundance, ]
MTD	id_confidence_measure[1]	[MS,MS:1002889,Progenesis MetaScope Score,]